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BaseInfo

ncRNA ID novel_zma_miR2490
Species Zea mays
Class miRNA
Genome position Chr1:249134661-249134716 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089714;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 33 - UUUUUAUUUGUCGUUGGAUAGUGU - 56
Stem-loop(if miRNA) --                         A
  UUUUUAUUUGUCGUUGGAUAGUGUA A
  |||||||||||||||||||||||||
  AAAAAUAAACAGCGACUUAUCACGU A
AG                         U
Stem-loop sequence UUUUUAUUUGUCGUUGGAUAGUGUAAAAUUGCACUAUUCAGCGACAAAUAAAAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403369.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||||||||||||||||
targets:56   ACACUAUCCAACGACAAAUAAAAA   79

0.0 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
JB163830.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||||||||||||||||
targets:56   ACACUAUCCAACGACAAAUAAAAA   79

0.0 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||||||||||||||||
targets:56   ACACUAUCCAACGACAAAUAAAAA   79

0.0 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
XM_020546613.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:3743   ACACUAUCCAGCGACAAAUAAAAA   3766

1.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:2964   ACACUAUCCAGCGACAAAUAAAAA   2987

1.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:2858   ACACUAUCCAGCGACAAAUAAAAA   2881

1.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:2841   ACACUAUCCAGCGACAAAUAAAAA   2864

1.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:1317   ACACUAUCCAGCGACAAAUAAAAA   1340

1.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:186   ACACUAUCCAGCGACAAAUAAAAA   209

1.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:1333   ACACUAUCCAGCGACAAAUAAAAA   1356

1.0 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:1333   ACACUAUCCAGCGACAAAUAAAAA   1356

1.0 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:1211   ACACUAUCCAGCGACAAAUAAAAA   1234

1.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
HI403401.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:56   ACACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163862.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:56   ACACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:56   ACACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
JB169079.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
LQ240748.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
JB170476.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
HI410015.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
HI408618.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
LQ242145.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=|||||||||||||
targets:49   ACACUAUCCAGCGACAAAUAAAAA   72

1.0 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||||||||||||||||
targets:2480   GUACUAUCCAACGACAAAUAAAAA   2503

0.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:2541   GCACUAUCCAGCGACAAAUAAAAA   2564

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=||||||=|||||||||||||
targets:2045   ACAUUAUCCAGCGACAAAUAAAAA   2068

1.0 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:1588   GCACUAUCCAGCGACAAAUAAAAA   1611

1.0 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:1572   GCACUAUCCAGCGACAAAUAAAAA   1595

1.0 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:1400   GCACUAUCCAGCGACAAAUAAAAA   1423

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:275   GCACUAUCCAGCGACAAAUAAAAA   298

1.0 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
EZ061437.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:213   GCACUAUCCAGCGACAAAUAAAAA   236

1.0 TSA: Zea mays contig62559, mRNA sequence NA coding protein psRNATarget
JB163740.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:56   GCACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
HI403279.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:56   GCACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
LQ235409.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=|||||||||||||
targets:56   GCACUAUCCAGCGACAAAUAAAAA   79

1.0 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
JB163755.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:56   ACACUAUCUAGCGACAAAUAAAAA   79

2.0 Sequence 1419 from Patent EP2559767 NA coding protein psRNATarget
LQ235424.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:56   ACACUAUCUAGCGACAAAUAAAAA   79

2.0 Sequence 1419 from Patent EP2985353 NA coding protein psRNATarget
HI403294.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:56   ACACUAUCUAGCGACAAAUAAAAA   79

2.0 Sequence 1419 from Patent EP2074227 NA coding protein psRNATarget
HI409699.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||||=||||||
targets:49   ACACUAUCCAGCGACAAGUAAAAA   72

2.5 Sequence 7824 from Patent EP2074227 NA coding protein psRNATarget
JB170160.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||||=||||||
targets:49   ACACUAUCCAGCGACAAGUAAAAA   72

2.5 Sequence 7824 from Patent EP2559767 NA coding protein psRNATarget
LQ241746.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:49   ACACUAUCUAGCGACAAAUAAAAA   72

2.0 Sequence 7741 from Patent EP2985353 NA coding protein psRNATarget
LQ241829.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||||=||||||
targets:49   ACACUAUCCAGCGACAAGUAAAAA   72

2.5 Sequence 7824 from Patent EP2985353 NA coding protein psRNATarget
HI409616.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:49   ACACUAUCUAGCGACAAAUAAAAA   72

2.0 Sequence 7741 from Patent EP2074227 NA coding protein psRNATarget
JB170077.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||=|=|||||||||||||
targets:49   ACACUAUCUAGCGACAAAUAAAAA   72

2.0 Sequence 7741 from Patent EP2559767 NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:614   GCACUAUUCAGCGACAAAUAAAAA   637

2.0 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:614   GCACUAUUCAGCGACAAAUAAAAA   637

2.0 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964901.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:542   GCACUAUUCAGCGACAAAUAAAAA   565

2.0 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
LQ242091.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
HI409961.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
LQ241075.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
JB169406.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
JB170422.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
HI408945.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=|||||||||||||
targets:49   GCACUAUUCAGCGACAAAUAAAAA   72

2.0 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
XM_020552423.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||||||||||*
targets:301   GCACUAUCCAGCGACAAAUAAAAC   324

2.0 PREDICTED: Zea mays kinesin-like protein KIN-14O (LOC103652735), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008679695.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||||||||||*
targets:302   GCACUAUCCAGCGACAAAUAAAAC   325

2.0 PREDICTED: Zea mays kinesin-like protein KIN-14O (LOC103652735), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||||||||*=|||||||||||||
targets:1508   ACACUAUCCUGCGACAAAUAAAAA   1531

2.0 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
XM_008675770.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:1853   ACACUAUCCAGCGACUAAUAAAAA   1876

2.5 PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:209   ACACUAUCCAGCGACUAAUAAAAA   232

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:1645   ACACUAUCCAGCGACUAAUAAAAA   1668

2.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
JB166321.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:50   ACACUAUCCAGCGACUAAUAAAAA   73

2.5 Sequence 3985 from Patent EP2559767 NA coding protein psRNATarget
LQ237990.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:50   ACACUAUCCAGCGACUAAUAAAAA   73

2.5 Sequence 3985 from Patent EP2985353 NA coding protein psRNATarget
HI405860.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:50   ACACUAUCCAGCGACUAAUAAAAA   73

2.5 Sequence 3985 from Patent EP2074227 NA coding protein psRNATarget
LQ240700.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||*||=|||||||||||||
targets:49   GCACUAUNCAGCGACAAAUAAAAA   72

2.0 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
HI408570.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||*||=|||||||||||||
targets:49   GCACUAUNCAGCGACAAAUAAAAA   72

2.0 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
JB169031.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||*||=|||||||||||||
targets:49   GCACUAUNCAGCGACAAAUAAAAA   72

2.0 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
JB170076.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=||||||||||||=
targets:49   GCACUAUUCAGCGACAAAUAAAAG   72

3.0 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
LQ241745.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=||||||||||||=
targets:49   GCACUAUUCAGCGACAAAUAAAAG   72

3.0 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
HI409615.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||=||=||||||||||||=
targets:49   GCACUAUUCAGCGACAAAUAAAAG   72

3.0 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
LQ237958.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:45   ACACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3953 from Patent EP2985353 NA coding protein psRNATarget
HI405828.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:45   ACACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3953 from Patent EP2074227 NA coding protein psRNATarget
JB166289.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:45   ACACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3953 from Patent EP2559767 NA coding protein psRNATarget
JB163828.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:40   ACACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1492 from Patent EP2559767 NA coding protein psRNATarget
LQ235497.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:40   ACACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1492 from Patent EP2985353 NA coding protein psRNATarget
HI403367.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ||||||||||=||||*||||||||
targets:40   ACACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1492 from Patent EP2074227 NA coding protein psRNATarget
XM_008664460.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:158   GCACUAUCCAGCGACUAAUAAAAA   181

2.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:2087   GCACUAUCCAGCGACUAAUAAAAA   2110

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:2020   GCACUAUCCAGCGACUAAUAAAAA   2043

2.5 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008675381.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:1260   GCACUAUCCAGCGACUAAUAAAAA   1283

2.5 PREDICTED: Zea mays probable WRKY transcription factor 48 (LOC103649650), mRNA NA coding protein psRNATarget
XM_008664463.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:138   GCACUAUCCAGCGACUAAUAAAAA   161

2.5 PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA NA coding protein psRNATarget
HI409234.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||||*||||||
targets:48   GCACUAUCCAGCGACAACUAAAAA   71

2.5 Sequence 7359 from Patent EP2074227 NA coding protein psRNATarget
LQ241364.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||||*||||||
targets:48   GCACUAUCCAGCGACAACUAAAAA   71

2.5 Sequence 7359 from Patent EP2985353 NA coding protein psRNATarget
JB169695.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||||*||||||
targets:48   GCACUAUCCAGCGACAACUAAAAA   71

2.5 Sequence 7359 from Patent EP2559767 NA coding protein psRNATarget
LQ237972.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:42   GCACUAUCCAGCGACUAAUAAAAA   65

2.5 Sequence 3967 from Patent EP2985353 NA coding protein psRNATarget
JB166303.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:42   GCACUAUCCAGCGACUAAUAAAAA   65

2.5 Sequence 3967 from Patent EP2559767 NA coding protein psRNATarget
HI405842.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:42   GCACUAUCCAGCGACUAAUAAAAA   65

2.5 Sequence 3967 from Patent EP2074227 NA coding protein psRNATarget
HI406357.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||||||||||||*||||||
targets:43   GUACUAUCCAACGACAACUAAAAA   66

1.5 Sequence 4482 from Patent EP2074227 NA coding protein psRNATarget
LQ238487.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||||||||||||*||||||
targets:43   GUACUAUCCAACGACAACUAAAAA   66

1.5 Sequence 4482 from Patent EP2985353 NA coding protein psRNATarget
JB166818.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||||||||||||*||||||
targets:43   GUACUAUCCAACGACAACUAAAAA   66

1.5 Sequence 4482 from Patent EP2559767 NA coding protein psRNATarget
JB163774.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1438 from Patent EP2559767 NA coding protein psRNATarget
LQ235443.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1438 from Patent EP2985353 NA coding protein psRNATarget
LQ235504.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1499 from Patent EP2985353 NA coding protein psRNATarget
JB163835.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1499 from Patent EP2559767 NA coding protein psRNATarget
HI403313.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1438 from Patent EP2074227 NA coding protein psRNATarget
HI403374.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =|||||||||=||||*||||||||
targets:40   GCACUAUCCAGCGACUAAUAAAAA   63

2.5 Sequence 1499 from Patent EP2074227 NA coding protein psRNATarget
EU952581.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=|||||||||||||*|||||*
targets:506   ACAUUAUCCAACGACAACUAAAAU   529

2.5 Zea mays clone 1283791 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149050.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=|||||||||||||*|||||*
targets:506   ACAUUAUCCAACGACAACUAAAAU   529

2.5 Zea mays hypothetical protein (LOC100274760), mRNA NA coding protein psRNATarget
JB169789.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||=||=||||||||||||*
targets:49   GUACUAUUCAGCGACAAAUAAAAC   72

3.0 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
LQ241458.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||=||=||||||||||||*
targets:49   GUACUAUUCAGCGACAAAUAAAAC   72

3.0 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
HI409328.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|||||=||=||||||||||||*
targets:49   GUACUAUUCAGCGACAAAUAAAAC   72

3.0 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
HI406375.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=|||||||||||||*|||||*
targets:40   ACAUUAUCCAACGACAACUAAAAU   63

2.5 Sequence 4500 from Patent EP2074227 NA coding protein psRNATarget
JB166836.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=|||||||||||||*|||||*
targets:40   ACAUUAUCCAACGACAACUAAAAU   63

2.5 Sequence 4500 from Patent EP2559767 NA coding protein psRNATarget
LQ238505.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |||=|||||||||||||*|||||*
targets:40   ACAUUAUCCAACGACAACUAAAAU   63

2.5 Sequence 4500 from Patent EP2985353 NA coding protein psRNATarget
JB167245.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||||||||||||*|||||*
targets:39   GCACUAUCCAACGACAACUAAAAC   62

2.5 Sequence 4909 from Patent EP2559767 NA coding protein psRNATarget
LQ238914.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||||||||||||*|||||*
targets:39   GCACUAUCCAACGACAACUAAAAC   62

2.5 Sequence 4909 from Patent EP2985353 NA coding protein psRNATarget
HI406784.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =||||||||||||||||*|||||*
targets:39   GCACUAUCCAACGACAACUAAAAC   62

2.5 Sequence 4909 from Patent EP2074227 NA coding protein psRNATarget
EU957761.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*|||||||||||||||*||||||
targets:337   AAACUAUCCAACGACAACUAAAAA   360

1.5 Zea mays clone 1614826 mRNA sequence NA coding protein psRNATarget
BT070166.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||=||||*||||||||
targets:809   GUACUAUCCAGCGACUAAUAAAAA   832

2.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||=||||*||||||||
targets:809   GUACUAUCCAGCGACUAAUAAAAA   832

2.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
HI405824.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||=||||*||||||||
targets:45   GUACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3949 from Patent EP2074227 NA coding protein psRNATarget
LQ237954.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||=||||*||||||||
targets:45   GUACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3949 from Patent EP2985353 NA coding protein psRNATarget
JB166285.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==||||||||=||||*||||||||
targets:45   GUACUAUCCAGCGACUAAUAAAAA   68

2.5 Sequence 3949 from Patent EP2559767 NA coding protein psRNATarget
XM_008669416.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  *||*||||||=|||=|||||||||
targets:534   UCAAUAUCCAGCGAUAAAUAAAAA   557

2.5 PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645651.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|=||||||=||||||*||||||
targets:1690   GUAUUAUCCAGCGACAACUAAAAA   1713

2.5 PREDICTED: Zea mays CAAX prenyl protease 1 (LOC100286144), transcript variant X1, mRNA NA coding protein psRNATarget
EU975832.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|=||||||=||||||*||||||
targets:1665   GUAUUAUCCAGCGACAACUAAAAA   1688

2.5 Zea mays clone 502363 CAAX prenyl protease 1 mRNA, complete cds NA coding protein psRNATarget
NM_001159032.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|=||||||=||||||*||||||
targets:1665   GUAUUAUCCAGCGACAACUAAAAA   1688

2.5 Zea mays CAAX prenyl protease 1 (LOC100286144), mRNA NA coding protein psRNATarget
BT065586.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  ==|=||||||=||||||*||||||
targets:1655   GUAUUAUCCAGCGACAACUAAAAA   1678

2.5 Zea mays full-length cDNA clone ZM_BFb0315O03 mRNA, complete cds NA coding protein psRNATarget
EU971616.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*||||||||=||||||*||||||
targets:1207   AAACUAUCCAGCGACAACUAAAAA   1230

2.5 Zea mays clone 368130 rieske domain containing protein mRNA, complete cds NA coding protein psRNATarget
EZ089411.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*||||||||=||||||*||||||
targets:352   AAACUAUCCAGCGACAACUAAAAA   375

2.5 TSA: Zea mays contig25057, mRNA sequence NA coding protein psRNATarget
HI403072.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*||||||||=||||||*||||||
targets:38   AAACUAUCCAGCGACAACUAAAAA   61

2.5 Sequence 1197 from Patent EP2074227 NA coding protein psRNATarget
JB163533.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*||||||||=||||||*||||||
targets:38   AAACUAUCCAGCGACAACUAAAAA   61

2.5 Sequence 1197 from Patent EP2559767 NA coding protein psRNATarget
LQ235202.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  |*||||||||=||||||*||||||
targets:38   AAACUAUCCAGCGACAACUAAAAA   61

2.5 Sequence 1197 from Patent EP2985353 NA coding protein psRNATarget
XM_020551485.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:2573   GAACUAUCCAGCGACAACUAAAAA   2596

2.5 PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1196   GAACUAUCCAGCGACAACUAAAAA   1219

2.5 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001156357.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1560   GAACUAUCCAGCGACAACUAAAAA   1583

2.5 Zea mays Acetylornithine deacetylase (pco121857a), mRNA NA coding protein psRNATarget
EU964807.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1560   GAACUAUCCAGCGACAACUAAAAA   1583

2.5 Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds NA coding protein psRNATarget
NM_001175582.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1477   GAACUAUCCAGCGACAACUAAAAA   1500

2.5 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1477   GAACUAUCCAGCGACAACUAAAAA   1500

2.5 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
XM_020549872.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:1310   GAACUAUCCAGCGACAACUAAAAA   1333

2.5 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
BT062468.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:616   GAACUAUCCAGCGACAACUAAAAA   639

2.5 Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds NA coding protein psRNATarget
HI407269.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:51   GAACUAUCCAGCGACAACUAAAAA   74

2.5 Sequence 5394 from Patent EP2074227 NA coding protein psRNATarget
JB167730.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:51   GAACUAUCCAGCGACAACUAAAAA   74

2.5 Sequence 5394 from Patent EP2559767 NA coding protein psRNATarget
LQ239399.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:51   GAACUAUCCAGCGACAACUAAAAA   74

2.5 Sequence 5394 from Patent EP2985353 NA coding protein psRNATarget
LQ241681.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:41   GAACUAUCCAGCGACAACUAAAAA   64

2.5 Sequence 7676 from Patent EP2985353 NA coding protein psRNATarget
HI409551.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:41   GAACUAUCCAGCGACAACUAAAAA   64

2.5 Sequence 7676 from Patent EP2074227 NA coding protein psRNATarget
JB170012.1
ncRNA:24   UGUGAUAGGUUGCUGUUUAUUUUU   1
  =*||||||||=||||||*||||||
targets:41   GAACUAUCCAGCGACAACUAAAAA   64

2.5 Sequence 7676 from Patent EP2559767 NA coding protein psRNATarget
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