Search result

BaseInfo

ncRNA ID novel_zma_miR2482
Species Zea mays
Class miRNA
Genome position Chr1:301047597-301047688 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089715;SRR2089705
Length 23
Mature sequence(if miRNA) 70 - CCAUGUGGAUUGGAGGGGAUUGA - 92
Stem-loop(if miRNA) --              G         -  A U     UCUAUAGCAA
  CCAUGUGGAUUGGA GGGAUUGAG UG G UUAAA          A
  |||||||||||||| ||||||||| || | |||||
  GGUACACCUAACCU CCCUAACUC AC C AAUUU          U
AG              G         U  - U     UUUCUAAAAC
Stem-loop sequence CCAUGUGGAUUGGAGGGGAUUGAGUGAGUUUAAAUCUAUAGCAAAUCAAAAUCUUUUUUAAUCCAUCUCAAUCCCGUCCAAUCCACAUGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001348011.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:445   UCAAUCCCCUCCAAUCCAUAUGG   467

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:699   UCAAUCCCCUCCAAUCCAUAUGG   721

1.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT062922.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:898   UCAAUCCCCUCCAAUCCAUAUGG   920

1.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:846   UCAAUCCCCUCCAAUCCAUAUGG   868

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959053.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866

1.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866

1.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:845   UCAAUCCCCUCCAAUCCAUAUGG   867

1.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008666525.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:917   UCAAUCCCCUCCAAUCCAUAUGG   939

1.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_020545207.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:22   UCAAUCCCCUCCAAUCCAUAUGG   44

1.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:1630   UCAAUCCCCUCCAAUCCAUAUGG   1652

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008658561.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||||||=||||
targets:301   UCAAUCCCCUCCAAUCCAUAUGG   323

1.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
JB166898.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *||||||||||||||||||||||
targets:74   CCAAUCCCCUCCAAUCCACAUGG   96

0.0 Sequence 4562 from Patent EP2559767 NA coding protein psRNATarget
LQ238567.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *||||||||||||||||||||||
targets:74   CCAAUCCCCUCCAAUCCACAUGG   96

0.0 Sequence 4562 from Patent EP2985353 NA coding protein psRNATarget
HI406437.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *||||||||||||||||||||||
targets:74   CCAAUCCCCUCCAAUCCACAUGG   96

0.0 Sequence 4562 from Patent EP2074227 NA coding protein psRNATarget
BT064935.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||=|||||||||=||||
targets:836   UCAAUCCCUUCCAAUCCAUAUGG   858

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU953075.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||=|||||||||||=||||
targets:1008   UCAAUCUCCUCCAAUCCAUAUGG   1030

2.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
XM_020548080.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||||||||||||||||=||||
targets:1160   UUAAUCCCCUCCAAUCCAUAUGG   1182

1.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||||||||||||||||=||||
targets:1198   UUAAUCCCCUCCAAUCCAUAUGG   1220

1.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020545025.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||=|||||||||||=||||
targets:335   UCAAUCUCCUCCAAUCCAUAUGG   357

2.5 PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA NA coding protein psRNATarget
NM_001176906.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||*||||||||
targets:262   UCAAUCCCCUCCAACCCACAUGG   284

1.5 Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA NA coding protein psRNATarget
BT069908.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||||||||*||||||||
targets:262   UCAAUCCCCUCCAACCCACAUGG   284

1.5 Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds NA coding protein psRNATarget
HI406953.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:11   UCAAUCCACUCCAAUCCAUAUGG   33

2.5 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
LQ239083.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:11   UCAAUCCACUCCAAUCCAUAUGG   33

2.5 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
JB167414.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:11   UCAAUCCACUCCAAUCCAUAUGG   33

2.5 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
BT055408.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:817   UCAAUCCACUCCAAUCCAUAUGG   839

2.5 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
NM_001152975.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:817   UCAAUCCACUCCAAUCCAUAUGG   839

2.5 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
XM_008649521.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:869   UCAAUCCACUCCAAUCCAUAUGG   891

2.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||||*||||||||||=||||
targets:898   UCAAUCCACUCCAAUCCAUAUGG   920

2.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660174.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  ||||||||*|||||||=||||||
targets:3595   UCAAUCCCAUCCAAUCUACAUGG   3617

2.5 PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA NA coding protein psRNATarget
JB170575.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2559767 NA coding protein psRNATarget
HI410114.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2074227 NA coding protein psRNATarget
LQ242244.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:77   CCAAUCCCAUCCAAUCCACAUGG   99

1.0 Sequence 8239 from Patent EP2985353 NA coding protein psRNATarget
EU945995.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:556   CCAAUCCCAUCCAAUCCACAUGG   578

1.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
BT024027.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *=||||||=|||||||||=||||
targets:1643   CUAAUCCCUUCCAAUCCAUAUGG   1665

2.5 Zea mays clone EL01N0420G12 mRNA sequence NA coding protein psRNATarget
BT055765.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *=||||||=|||||||||=||||
targets:2321   CUAAUCCCUUCCAAUCCAUAUGG   2343

2.5 Zea mays full-length cDNA clone ZM_BFb0178P09 mRNA, complete cds NA coding protein psRNATarget
NM_001153131.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *=||||||=|||||||||=||||
targets:2321   CUAAUCCCUUCCAAUCCAUAUGG   2343

2.5 Zea mays putative protein kinase superfamily protein (LOC100280200), mRNA NA coding protein psRNATarget
XM_020551501.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:1291   CCAAUCCCAUCCAAUCCACAUGG   1313

1.0 PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539455.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||||||
targets:280   CCAAUCCCAUCCAAUCCACAUGG   302

1.0 PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA NA coding protein psRNATarget
HI403302.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||=|||
targets:87   CCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2074227 NA coding protein psRNATarget
LQ235432.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||=|||
targets:87   CCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2985353 NA coding protein psRNATarget
JB163763.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*||||||||||=|||
targets:87   CCAAUCCCAUCCAAUCCACGUGG   109

2.5 Sequence 1427 from Patent EP2559767 NA coding protein psRNATarget
JB170105.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||=|*||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2559767 NA coding protein psRNATarget
LQ241774.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||=|*||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2985353 NA coding protein psRNATarget
HI409644.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||=|*||||||||||||||
targets:98   CCAAUCUCAUCCAAUCCACAUGG   120

2.0 Sequence 7769 from Patent EP2074227 NA coding protein psRNATarget
EU964801.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||=|||||||||||*||
targets:490   ACAAUCCCUUCCAAUCCACAAGG   512

2.5 Zea mays clone 281630 mRNA sequence NA coding protein psRNATarget
XM_020551219.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*||*||||||||||||||
targets:292   UCAAUACCAUCCAAUCCACAUGG   314

2.0 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget
BT041309.1
ncRNA:23   AG-UUAGGGGAGGUUAGGUGUACC   1
  ||-||||=|*||||||||||||||
targets:180   UCUAAUCUCAUCCAAUCCACAUGG   203

2.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT041309.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*=|*||||||||||||||
targets:108   UCAAUAUCAUCCAAUCCACAUGG   130

3.0 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT083591.1
ncRNA:23   AG-UUAGGGGAGGUUAGGUGUACC   1
  ||-||||=|*||||||||||||||
targets:1182   UCUAAUCUCAUCCAAUCCACAUGG   1205

2.0 Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds NA coding protein psRNATarget
EU973712.1
ncRNA:23   AG-UUAGGGGAGGUUAGGUGUACC   1
  ||-||||=|*||||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

2.0 Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds NA coding protein psRNATarget
NM_001158639.1
ncRNA:23   AG-UUAGGGGAGGUUAGGUGUACC   1
  ||-||||=|*||||||||||||||
targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309

2.0 Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA NA coding protein psRNATarget
XM_008674543.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||*|||||||||||||*
targets:2500   CCAAUCCCAUCCAAUCCACAUGA   2522

2.0 PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA NA coding protein psRNATarget
JB167116.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*=|*||||||||||||||
targets:145   UCAAUAUCAUCCAAUCCACAUGG   167

3.0 Sequence 4780 from Patent EP2559767 NA coding protein psRNATarget
LQ238785.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*=|*||||||||||||||
targets:145   UCAAUAUCAUCCAAUCCACAUGG   167

3.0 Sequence 4780 from Patent EP2985353 NA coding protein psRNATarget
HI406655.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*=|*||||||||||||||
targets:145   UCAAUAUCAUCCAAUCCACAUGG   167

3.0 Sequence 4780 from Patent EP2074227 NA coding protein psRNATarget
EU974368.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |||||*=|*||||||||||||||
targets:1247   UCAAUAUCAUCCAAUCCACAUGG   1269

3.0 Zea mays clone 447232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020538633.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:3935   UUAAACCCAUCCAAUCCACAUGG   3957

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008647808.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:4048   UUAAACCCAUCCAAUCCACAUGG   4070

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538630.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:4087   UUAAACCCAUCCAAUCCACAUGG   4109

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020538631.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:4835   UUAAACCCAUCCAAUCCACAUGG   4857

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538632.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:4836   UUAAACCCAUCCAAUCCACAUGG   4858

2.0 PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001350089.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  |=||*|||*||||||||||||||
targets:5898   UUAAACCCAUCCAAUCCACAUGG   5920

2.0 Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA NA coding protein psRNATarget
XM_008651067.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  **|||||*|||=|||||||||||
targets:49   CAAAUCCACUCUAAUCCACAUGG   71

2.5 PREDICTED: Zea mays RING-H2 finger protein ATL14 (LOC103629965), mRNA NA coding protein psRNATarget
LQ241402.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||**|||||||||||||
targets:77   CCAAUCCCACCCAAUCCACAUGG   99

2.0 Sequence 7397 from Patent EP2985353 NA coding protein psRNATarget
JB169733.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||**|||||||||||||
targets:77   CCAAUCCCACCCAAUCCACAUGG   99

2.0 Sequence 7397 from Patent EP2559767 NA coding protein psRNATarget
HI409272.1
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||**|||||||||||||
targets:77   CCAAUCCCACCCAAUCCACAUGG   99

2.0 Sequence 7397 from Patent EP2074227 NA coding protein psRNATarget
XM_008678390.2
ncRNA:23   AGUUAGGGGAGGUUAGGUGUACC   1
  *|||||||**|||||||||||||
targets:1814   CCAAUCCCACCCAAUCCACAUGG   1836

2.0 PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.