Search result

BaseInfo

ncRNA ID	novel_zma_miR2480
Species	Zea mays
Class	miRNA
Genome position	Chr4:62289530-62289584 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUUUCUAUUUUCUCAAGGGAAAAU - 24
Stem-loop(if miRNA)	--    CU      UC        AUG   AUUU  AUUUUC  AAGGGAAA   A   ||||  ||||||  ||||||||   A   UAAA  UAAAAG  UUCCCUUU   C CC    AC      GA        AAU
Stem-loop sequence	AUUUCUAUUUUCUCAAGGGAAAAUGAACUAAUUUCCCUUAGGAAAAUCAAAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676590.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||||||||||||||||=||| targets:4062   AUUUUCCCUUGAGAAAAUAGGAAU   4085 Target Full Sequence	1.5	PREDICTED: Zea mays Asparagine synthase family protein (si683017d09), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674763.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1300   AUUUUCUCUUGAGAAAAUAGAAAU   1323 Target Full Sequence	1.0	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064672.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1311   AUUUUCUCUUGAGAAAAUAGAAAU   1334 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008O01 mRNA, complete cds	NA	coding protein	psRNATarget
EU970039.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1205   AUUUUCUCUUGAGAAAAUAGAAAU   1228 Target Full Sequence	1.0	Zea mays clone 338909 stress regulated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157788.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1204   AUUUUCUCUUGAGAAAAUAGAAAU   1227 Target Full Sequence	1.0	Zea mays stress regulated protein (LOC100284893), mRNA	NA	coding protein	psRNATarget
BT037070.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1192   AUUUUCUCUUGAGAAAAUAGAAAU   1215 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153L10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674764.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1110   AUUUUCUCUUGAGAAAAUAGAAAU   1133 Target Full Sequence	1.0	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT065169.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:1107   AUUUUCUCUUGAGAAAAUAGAAAU   1130 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0015J15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ112868.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=||||||||||||||||| targets:117   AUUUUCUCUUGAGAAAAUAGAAAU   140 Target Full Sequence	1.0	TSA: Zea mays contig48529, mRNA sequence	NA	coding protein	psRNATarget
EZ113293.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||||||||||||||||=||| targets:159   AUUUUCCCUUGAGAAAAUAGGAAU   182 Target Full Sequence	1.5	TSA: Zea mays contig48954, mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||=|||||=|||||||||||| targets:804   AUUUUUCCUUGGGAAAAUAGAAAU   827 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658779.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||=|=|||||||||||||||| targets:1912   AUUUUUCUUUGAGAAAAUAGAAAU   1935 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
EU969579.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1608   AUUUUUUCUUGAGAAAAUAGAAAU   1631 Target Full Sequence	2.0	Zea mays clone 332632 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151130.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1608   AUUUUUUCUUGAGAAAAUAGAAAU   1631 Target Full Sequence	2.0	Zea mays uncharacterized LOC100277618 (LOC100277618), mRNA	NA	coding protein	psRNATarget
BT037017.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1197   AUUUUUUCUUGAGAAAAUAGAAAU   1220 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0151L07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143008.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||==||||||||||||||||| targets:1197   AUUUUUUCUUGAGAAAAUAGAAAU   1220 Target Full Sequence	2.0	Zea mays Calmodulin-like protein 2 (LOC100216594), mRNA	NA	coding protein	psRNATarget
XM_008650029.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||==|||||||||||||||* targets:2888   AUUUUCUUUUGAGAAAAUAGAAAG   2911 Target Full Sequence	3.0	PREDICTED: Zea mays Ribonucleoside-diphosphate reductase (LOC100502278), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001196755.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||==|||||||||||||||* targets:917   AUUUUCUUUUGAGAAAAUAGAAAG   940 Target Full Sequence	3.0	Zea mays Ribonucleoside-diphosphate reductase (LOC100502278), mRNA	NA	coding protein	psRNATarget
BT087604.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||==|||||||||||||||* targets:917   AUUUUCUUUUGAGAAAAUAGAAAG   940 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0127F20 mRNA, complete cds	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |*|||||||||=|||||||||||| targets:1746   AAUUUCCCUUGGGAAAAUAGAAAU   1769 Target Full Sequence	1.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_008669712.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||=||*||||||||||||||| targets:2166   AUUUUUCCAUGAGAAAAUAGAAAU   2189 Target Full Sequence	2.0	PREDICTED: Zea mays DHHC zinc finger domain containing protein (LOC100281605), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001154524.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||=||*||||||||||||||| targets:1937   AUUUUUCCAUGAGAAAAUAGAAAU   1960 Target Full Sequence	2.0	Zea mays DHHC zinc finger domain containing protein (LOC100281605), mRNA	NA	coding protein	psRNATarget
EU957224.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||=||*||||||||||||||| targets:1937   AUUUUUCCAUGAGAAAAUAGAAAU   1960 Target Full Sequence	2.0	Zea mays clone 1586117 DHHC zinc finger domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ094506.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   ||||||=*|||||||||||||||| targets:11   AUUUUCUAUUGAGAAAAUAGAAAU   34 Target Full Sequence	2.0	TSA: Zea mays contig30158, mRNA sequence	NA	coding protein	psRNATarget
XM_008656202.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |||||==|||*||||||||||||| targets:1517   AUUUUUUCUUAAGAAAAUAGAAAU   1540 Target Full Sequence	3.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL7 (LOC103634484), mRNA	NA	coding protein	psRNATarget
XM_008652877.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |*|||=|||||||||||||*|||| targets:2359   AGUUUUCCUUGAGAAAAUAAAAAU   2382 Target Full Sequence	2.5	PREDICTED: Zea mays D-2-hydroxyglutarate dehydrogenase mitochondrial (si618066c08), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054719.2	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |*||||=*|||||||||||||||| targets:81   AAUUUCUAUUGAGAAAAUAGAAAU   104 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0117L17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152660.1	ncRNA:24   UAAAAGGGAACUCUUUUAUCUUUA   1   |*||||=*|||||||||||||||| targets:81   AAUUUCUAUUGAGAAAAUAGAAAU   104 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279696 (LOC100279696), mRNA	NA	coding protein	psRNATarget
NM_001322976.1	ncRNA:24   UAAA--AGGGAACUCUUUUAUCUUUA   1   ||||--|||||*|||||||*|||||| targets:2818   AUUUGUUCCCUGGAGAAAAGAGAAAU   2843 Target Full Sequence	2.5	Zea mays TPR repeat-containing thioredoxin TTL1 (LOC100502390), mRNA	NA	coding protein	psRNATarget
BT087982.1	ncRNA:24   UAAA--AGGGAACUCUUUUAUCUUUA   1   ||||--|||||*|||||||*|||||| targets:905   AUUUGUUCCCUGGAGAAAAGAGAAAU   930 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0339E14 mRNA, complete cds	NA	coding protein	psRNATarget
EU942441.1	ncRNA:24   UAAA--AGGGAACUCUUUUAUCUUUA   1   ||||--|||||*|||||||*|||||| targets:412   AUUUGUUCCCUGGAGAAAAGAGAAAU   437 Target Full Sequence	2.5	Zea mays clone 1501443 mRNA sequence	NA	coding protein	psRNATarget