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BaseInfo

ncRNA ID osa-miR1882c
Species Oryza sativa
Class miRNA
Genome position Chr7:9122411-9122540 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 7 - AGAUUGCUUUCAAGGUCAUUUCUU - 30
Stem-loop(if miRNA) -UA           U              U           CA        A  U     U   A
   UCCUAGAUUGC UUCAAGGUCAUUUC UUAGGGAACCC  UUCCCAUA AU CAGUA CCA A
   ||||||||||| |||||||||||||| |||||||||||  |||||||| || ||||| |||
   AGGAUCUAACG AGGUUCUAGUAAAG AAUCCCUUGGG  AAGGGUAU UA GUUGU GGU G
UUG           C              C           -A        C  U     U   C
Stem-loop sequence UAUCCUAGAUUGCUUUCAAGGUCAUUUCUUUAGGGAACCCCAUUCCCAUAAAUUCAGUAUCCAAAGCUGGUUGUUGUAUCUAUGGGAAAGGGUUCCCUAACGAAAUGAUCUUGGACGCAAUCUAGGAGUU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).