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BaseInfo

ncRNA ID	novel_zma_miR2479
Species	Zea mays
Class	miRNA
Genome position	Chr10:145073044-145073096 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - ACCGGACUGUCCGGCGCGCCCGUC - 24
Stem-loop(if miRNA)	--CU     A       GU             GGCGC CCGGACA  GUCCGGUGG     ||||| |||||||  ||||||||C     CCGCG GGCCUGU  CAGGCCACG CUGC     C       --
Stem-loop sequence	CUGGCGCACCGGACAGUGUCCGGUGGCGCACCGGACUGUCCGGCGCGCCCGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108756.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||=||||||*|||||||||||||| targets:144   GAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	1.0	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *||||||||*|||||||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:538   GACCGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *||||||||*|||||||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:538   GACCGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||=|||=||*|||||||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *=|*||=||*|||||||||||||| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||=|||=||*|||||||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *=|*||=||*|||||||||||||| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUGC--CCGCGCGGCCUGUCAGGCCA   1   ||||--|||||*|||||||||||||| targets:597   GACGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|*|||||*|||||||||||||| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:691   GACCGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUGC--CCGCGCGGCCUGUCAGGCCA   1   ||||--|||||*|||||||||||||| targets:597   GACGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|*|||||*|||||||||||||| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:691   GACCGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|||||||*|||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:713   GACCGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|||||||*|||||||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:713   GACCGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |||*|||||*|||||||||||||| targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	1.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|||||||*|||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CU-GCCCGCGCGGCCUGUCAGGCCA   1   ||-|*|||||*|||||||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:674   GACCGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|||||||*|||||||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CU-GCCCGCGCGGCCUGUCAGGCCA   1   ||-|*|||||*|||||||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:674   GACCGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|||||||*|||||||||||||| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*||||=||*|||||||||||||| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   CUGCCCGC-GCGGCCUGUCAGGCCA   1   *|||||*|-|||||||||||||||| targets:858   CACGGGAGGCGCCGGACAGUCCGGU   882 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*||||=||*|||||||||||||| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   CUGCCCGC-GCGGCCUGUCAGGCCA   1   *|||||*|-|||||||||||||||| targets:1229   CACGGGAGGCGCCGGACAGUCCGGU   1253 Target Full Sequence	3.0	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CUG--C---CCGCGCGGCCUGUCAGGCCA   1   |||--|---|||||*|||||||||||||| targets:773   GACCAGCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**|||||*|||||||||||||| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CUG--C---CCGCGCGGCCUGUCAGGCCA   1   |||--|---|||||*|||||||||||||| targets:773   GACCAGCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**|||||*|||||||||||||| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CUGC---CCGCGCGGCCUGUCAGGCCA   1   |*||---|||||*|||||||||||||| targets:86   GUCGCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	1.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|*|||||*|||||||||||||| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:577   GACCGUUGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CUGC---CCGCGCGGCCUGUCAGGCCA   1   |*||---|||||*|||||||||||||| targets:470   GUCGCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *=|*|||*|*|||||||||||||| targets:695   CGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|*|||||*||||||*||||||| targets:399   GUCUGGCGCACCGGACUGUCCGGU   422 Target Full Sequence	2.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   CCCGCGCGGCCUGUCAGGCCA   1   *|||||*|||||||||||||| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	1.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
BT042818.1	ncRNA:24   CUGC-----CCGCGCGGCCUGUCAGGCCA   1   ||||-----|||||*||||||*||||||| targets:825   GACGUGGCAGGCGCACCGGACUGUCCGGU   853 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**||=||*|||||||||||||| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**||=||*|||||||||||||| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**||=||*|||||||||||||| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**|||||*|=|||||||||||| targets:65   GAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**|||||*|=|||||||||||| targets:65   GAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   ||**|||||*|=|||||||||||| targets:65   GAGUGGCGCACUGGACAGUCCGGU   88 Target Full Sequence	2.5	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CUGC---CCGCGCGGCCUGUCAGGCCA   1   |*||---|||||*|||||||||=|||| targets:411   GUCGCAUGGCGCACCGGACAGUUCGGU   437 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|*||=||*|||||||||||||| targets:761   CCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   |*|*||=||*|||||||||||||| targets:828   GCCUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CUG-C--CCGCGCGGCCUGUCAGGCCA   1   |||-|--|||*|*|||||||||||||| targets:386   GACCGUUGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|*||=||*|||||||||||||| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *||*|||*|*|||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|*||=||*|||||||||||||| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *||*|||*|*|||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   **|*||=||*|||||||||||||| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CUGCCCGCGCGGCCUGUCAGGCCA   1   *||*|||*|*|||||||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget