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BaseInfo

ncRNA ID	novel_zma_miR2478
Species	Zea mays
Class	miRNA
Genome position	Chr1:263675798-263675938 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089714
Length	21
Mature sequence(if miRNA)	1 - UCUUGUUCGAUUGCGUCUGGA - 21
Stem-loop(if miRNA)	--U        A   C        C   -A   AAU      GAUUAA    -C   AUAU    UU    CU    CUUGUUCG UUG GUCUGGAU GAA  GGA   GAGGGA      AGUC  UCU    UCAA  UUGA  A    |||||||| ||| |||||||| |||  |||   ||||||      ||||  |||    ||||  ||||    GAACAAGC AAU CGGAUCUA CUU  CCU   CUCCCU      UUAG  AGA    AGUU  AACU  U CCC        C   A        C   CC   AAC      ---AAC    AA   GUUC    UU    UA
Stem-loop sequence	UCUUGUUCGAUUGCGUCUGGAUCGAAAGGAAAUGAGGGAGAUUAAAGUCCUCUAUAUUCAAUUUUGACUAUAUUCAAUUUUGACUUGAGAAAGAUUCAAUCCCUCCAAUCCCCUUCCAUCUAGGCAUAACCGAACAAGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY110278.1	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   |||||||||||*||||||||* targets:199   UCCAGACGCAACCGAACAAGC   219 Target Full Sequence	2.5	Zea mays CL14707_1 mRNA sequence	NA	coding protein	psRNATarget
EU968756.1	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   ||||*|=|||||||||||||= targets:943   UCCACAUGCAAUCGAACAAGG   963 Target Full Sequence	3.0	Zea mays clone 323940 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279564.2	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   ||||*|=|||||||||||||= targets:1264   UCCACAUGCAAUCGAACAAGG   1284 Target Full Sequence	3.0	Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA	NA	coding protein	psRNATarget
EU960921.1	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   ||||*|=|||||||||||||= targets:1267   UCCACAUGCAAUCGAACAAGG   1287 Target Full Sequence	3.0	Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550633.1	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   |*||||=|*|||||||||||| targets:1089   UACAGAUGAAAUCGAACAAGA   1109 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100278518), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008674435.2	ncRNA:21   AGGUCUGCGUUAGCUUGUUCU   1   |*||||=|*|||||||||||| targets:1089   UACAGAUGAAAUCGAACAAGA   1109 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100278518), transcript variant X5, mRNA	NA	coding protein	psRNATarget