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BaseInfo

ncRNA ID	novel_zma_miR2476
Species	Zea mays
Class	miRNA
Genome position	Chr1:249360017-249360113 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	74 - ACACUCGGCAAAGACGCUGUCUCC - 97
Stem-loop(if miRNA)	--      AU               GUU   CA               U   AGAUGG  UCUUUGCCGAGUGUU   GGG  GACACUCGGCAAAGG A   ||||||  |||||||||||||||   |||  ||||||||||||||| A   UCUGUC  AGAAACGGCUCACAG   CCC  CUGUGAGCCGUUUCC C CC      GC               -GU   -A               U
Stem-loop sequence	AGAUGGAUUCUUUGCCGAGUGUUGUUGGGCAGACACUCGGCAAAGGUAACUCCUUUGCCGAGUGUCACCCUGGACACUCGGCAAAGACGCUGUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406639.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   |||||==|*||||||||||||||| targets:11   GGAGAUGGAGUCUUUGCCGAGUGU   34 Target Full Sequence	3.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   |||||==|*||||||||||||||| targets:11   GGAGAUGGAGUCUUUGCCGAGUGU   34 Target Full Sequence	3.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   |||||==|*||||||||||||||| targets:11   GGAGAUGGAGUCUUUGCCGAGUGU   34 Target Full Sequence	3.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
EU971646.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   |||-|=*|=||||||||||||||| targets:821   GGA-AUCGUGUCUUUGCCGAGUGU   843 Target Full Sequence	3.0	Zea mays clone 368614 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=|||*|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=|||*|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=|||*|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
HI406203.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   **|||=|**|||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	3.0	Sequence 4328 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238333.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   **|||=|**|||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	3.0	Sequence 4328 from Patent EP2985353	NA	coding protein	psRNATarget
JB166664.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   **|||=|**|||||||||||||| targets:1   CUGACGGAUUCUUUGCCGAGUGU   23 Target Full Sequence	3.0	Sequence 4328 from Patent EP2559767	NA	coding protein	psRNATarget
EZ114211.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   ||**||*|*||||||||||||||| targets:325   GGCUACCGAGUCUUUGCCGAGUGU   348 Target Full Sequence	2.0	TSA: Zea mays contig49872, mRNA sequence	NA	coding protein	psRNATarget
EU943169.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   |||**|=*|||||||||||||||* targets:738   GGAAUCGCCGUCUUUGCCGAGUGC   761 Target Full Sequence	3.0	Zea mays clone 1575275 mRNA sequence	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   |*|||||*|*||||||||||||* targets:1   GCGACAGAGACUUUGCCGAGUGC   23 Target Full Sequence	3.0	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
JB167233.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   |*|||||*|*||||||||||||* targets:1   GCGACAGAGACUUUGCCGAGUGC   23 Target Full Sequence	3.0	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
HI406772.1	ncRNA:23   CUCUGUCGCAGAAACGGCUCACA   1   |*|||||*|*||||||||||||* targets:1   GCGACAGAGACUUUGCCGAGUGC   23 Target Full Sequence	3.0	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	3.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   CCUCUGUCGCAGAAACGGCUCACA   1   *|=*|=||**|||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	3.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget