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BaseInfo

ncRNA ID novel_zma_miR2473
Species Zea mays
Class miRNA
Genome position Chr10:149451809-149451903 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2287159;SRR2287161;SRR2287164;SRR2287165;SRR2647387;SRR2647389;SRR1745812;SRR4237220;SRR4237221;SRR4237222;SRR4237223;SRR4237226;SRR5099742;SRR5100255;SRR5105959;SRR5105961;SRR5105963
Length 21
Mature sequence(if miRNA) 75 - UCCAAAGGGAUCGCAUUGAUC - 95
Stem-loop(if miRNA) --           C        CUAAC    ---CGA   AC  -  -  G
  UCCAAAGGGAU GCAUUGAU     CUGC      UCG  GC CG AC U
  ||||||||||| ||||||||     ||||      |||  || || ||
  AGGUUUCCCUA CGUGACUG     GACG      AGC  CG GC UG A
UA           A        -ACUA    AACAGG   -C  U  A  C
Stem-loop sequence UCCAAAGGGAUCGCAUUGAUCUAACCUGCCGAUCGACGCCGACGUACGUACGUGCCCGAGGACAAGCAGAUCAGUCAGUGCAAUCCCUUUGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163660.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2559767 NA coding protein psRNATarget
HI402916.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2074227 NA coding protein psRNATarget
LQ235329.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2985353 NA coding protein psRNATarget
LQ235046.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2985353 NA coding protein psRNATarget
JB163377.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1041 from Patent EP2559767 NA coding protein psRNATarget
HI403199.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||||||||||||||||||
targets:85   GAUCAAUGCGAUCCCUUUGGA   105

0.0 Sequence 1324 from Patent EP2074227 NA coding protein psRNATarget
HI403071.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2074227 NA coding protein psRNATarget
LQ235489.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2985353 NA coding protein psRNATarget
JB163532.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2559767 NA coding protein psRNATarget
LQ235201.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1196 from Patent EP2985353 NA coding protein psRNATarget
JB163820.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2559767 NA coding protein psRNATarget
HI403359.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  |||||=|||*|||||||||||
targets:76   GAUCAGUGCAAUCCCUUUGGA   96

2.5 Sequence 1484 from Patent EP2074227 NA coding protein psRNATarget
BT017377.1
ncRNA:19   AGUUACGCUAGGGAAACCU   1
  *||||||||||||||||||
targets:1   ACAAUGCGAUCCCUUUGGA   19

1.0 Zea mays clone EL01N0325G08.c mRNA sequence NA coding protein psRNATarget
BT037254.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:1862   ACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays full-length cDNA clone ZM_BFb0160H24 mRNA, complete cds NA coding protein psRNATarget
NM_001143136.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:1862   ACACAAUGCGAUCCCUUUGGA   1882

1.0 Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), mRNA NA coding protein psRNATarget
XM_008663266.2
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:2196   ACACAAUGCGAUCCCUUUGGA   2216

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008663267.2
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  ***||||||||||||||||||
targets:2193   ACACAAUGCGAUCCCUUUGGA   2213

1.0 PREDICTED: Zea mays Protein AUXIN SIGNALING F-BOX 3 (LOC100216731), transcript variant X2, mRNA NA coding protein psRNATarget
LQ242107.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2985353 NA coding protein psRNATarget
HI409977.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2074227 NA coding protein psRNATarget
JB170438.1
ncRNA:21   CUAGUUACGCUAGGGAAACCU   1
  *=|||=|||*|||||||||||
targets:9   AGUCAGUGCAAUCCCUUUGGA   29

2.5 Sequence 8102 from Patent EP2559767 NA coding protein psRNATarget
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