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BaseInfo

ncRNA ID novel_zma_miR2468
Species Zea mays
Class miRNA
Genome position Chr1:214798637-214798706 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 47 - AAAAUAAACUUAUUUUCGGCGGCC - 70
Stem-loop(if miRNA) --     A         CAG        A    AUU
  CCGCC AAAAUAAGU   UAUUUUCG CGGC   G
  ||||| |||||||||   |||||||| ||||
  GGCGG UUUUAUUCA   AUAAAAGC GCCG   C
CC     C         --A        C    ACU
Stem-loop sequence CCGCCAAAAAUAAGUCAGUAUUUUCGACGGCAUUGCUCAGCCGCCGAAAAUAAACUUAUUUUCGGCGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546193.1
ncRNA:24   CCGGCGGCUUUUAUUCAAAUAAAA   1
  ||||||||||||||||*|||||||
targets:522   GGCCGCCGAAAAUAAGGUUAUUUU   545

1.5 PREDICTED: Zea mays spidroin-1-like (LOC103636899), mRNA NA coding protein psRNATarget
XM_008654649.2
ncRNA:24   CCGGCGGCUUUUAUUCAAAUAAAA   1
  *|==*=||||||*|||||||||||
targets:1068   UGUUUUCGAAAACAAGUUUAUUUU   1091

2.5 PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103632941), mRNA NA coding protein psRNATarget