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BaseInfo

ncRNA ID	novel_zma_miR2466
Species	Zea mays
Class	miRNA
Genome position	Chr10:149196758-149196847 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089701
Length	24
Mature sequence(if miRNA)	1 - GGAUUGAUGGGGAUUGGAGGGGAU - 24
Stem-loop(if miRNA)	--                                  C    UUAA   GGAUUGAUGGGGAUUGGAGGGGAUUAAAUCCCCU CUAU    U   |||||||||||||||||||||||||||||||||| ||||   CCUAGCUACCCCUAAUCUCCUCUAAUUUAGGGGA GAUA    U CA                                  A    UGUU
Stem-loop sequence	GGAUUGAUGGGGAUUGGAGGGGAUUAAAUCCCCUCCUAUUUAAUUUUGUAUAGAAGGGGAUUUAAUCUCCUCUAAUCCCCAUCGAUCCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   ||||||||||||||||*||||||| targets:3272   AUCCCCUCCAAUCCCCCUCAAUCC   3295 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   ||||||||||||||||*||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   ||||||||||||||||*||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   |||||=||||||||||*||||||| targets:32   AUCCCUUCCAAUCCCCCUCAAUCC   55 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   *|||=|||||||||||*||||||| targets:57   UUCCUCUCCAAUCCCCUUCAAUCC   80 Target Full Sequence	1.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   ||||*|||||||||||*||||||| targets:3920   AUCCACUCCAAUCCCCCUCAAUCC   3943 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   |*|||||=||||||||*||||||| targets:842   AACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   ||||=|*|||||||||*||||||| targets:1022   AUCCUCACCAAUCCCCUUCAAUCC   1045 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
EU967673.1	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   |||=*||||=||||||*||||||| targets:945   AUCUGCUCCGAUCCCCUUCAAUCC   968 Target Full Sequence	2.5	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:24   UAGGGGAGGUUAGGGGUAGUUAGG   1   |||=*||||=||||||*||||||| targets:1071   AUCUGCUCCGAUCCCCUUCAAUCC   1094 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget