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BaseInfo

ncRNA ID	novel_zma_miR2461
Species	Zea mays
Class	miRNA
Genome position	Chr9:109028874-109028963 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089714;SRR2287031
Length	24
Mature sequence(if miRNA)	1 - CAUGUGGAUUGAGUGGGAUCGGAU - 24
Stem-loop(if miRNA)	--           AGU     C   --UGA   UGAAUCCCAAACA   CAUGUGGAUUG   GGGAU GGA     GUU             A   |||||||||||   ||||| |||     |||   GUGUACCUAAC   CCCUA CCU     AAG             G AU           CUU     A   UUUUU   AAUUCUUCAAACU
Stem-loop sequence	CAUGUGGAUUGAGUGGGAUCGGAUGAGUUUGAAUCCCAAACAAGUCAAACUUCUUAAGAAUUUUUUCCAAUCCCUUCCAAUCCAUGUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052459.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||||||||=||||||||||=||| targets:25   AUCCGAUCCUACUCAAUCCAUAUG   48 Target Full Sequence	2.5	TSA: Zea mays contig53580, mRNA sequence	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:80   AUCCAAUCCCACUCAAUCCACAUG   103 Target Full Sequence	0.0	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:80   AUCCAAUCCCACUCAAUCCACAUG   103 Target Full Sequence	0.0	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:80   AUCCAAUCCCACUCAAUCCACAUG   103 Target Full Sequence	0.0	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:81   AUCCAAUCCCACUCAAUCCACAUG   104 Target Full Sequence	0.0	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:81   AUCCAAUCCCACUCAAUCCACAUG   104 Target Full Sequence	0.0	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:81   AUCCAAUCCCACUCAAUCCACAUG   104 Target Full Sequence	0.0	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:90   AUCCAAUCCCACUCAAUCCACAUG   113 Target Full Sequence	0.0	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:90   AUCCAAUCCCACUCAAUCCACAUG   113 Target Full Sequence	0.0	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:90   AUCCAAUCCCACUCAAUCCACAUG   113 Target Full Sequence	0.0	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:99   AUCCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:121   AUCCAAUCCCACUCAAUCCACAUG   144 Target Full Sequence	0.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:746   AUCCAAUCCCACUCAAUCCACAUG   769 Target Full Sequence	0.0	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:875   AUCCAAUCCCACUCAAUCCACAUG   898 Target Full Sequence	0.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:177   AUCCAAUCCCACUCAAUCCACAUG   200 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:529   AUCCAAUCCCACUCAAUCCACAUG   552 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1531   AUCCAAUCCCACUCAAUCCACAUG   1554 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1531   AUCCAAUCCCACUCAAUCCACAUG   1554 Target Full Sequence	0.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1816   AUCCAAUCCCACUCAAUCCACAUG   1839 Target Full Sequence	0.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1816   AUCCAAUCCCACUCAAUCCACAUG   1839 Target Full Sequence	0.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:2212   AUCCAAUCCCACUCAAUCCACAUG   2235 Target Full Sequence	0.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:2501   AUCCAAUCCCACUCAAUCCACAUG   2524 Target Full Sequence	0.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1959   AUCCAAUCCCACUCAAUCCACAUG   1982 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1959   AUCCAAUCCCACUCAAUCCACAUG   1982 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1082   AUCCAAUCCCACUCAAUCCACAUG   1105 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1200   AUCCAAUCCCACUCAAUCCACAUG   1223 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1200   AUCCAAUCCCACUCAAUCCACAUG   1223 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:1230   AUCCAAUCCCACUCAAUCCACAUG   1253 Target Full Sequence	0.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||||||||||||| targets:5805   AUCCAAUCCCACUCAAUCCACAUG   5828 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:17   AUCCAAUCUCACUCAAUCCACAUG   40 Target Full Sequence	1.0	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:80   AUCCAAUCUCACUCAAUCCACAUG   103 Target Full Sequence	1.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:80   AUCCAAUCUCACUCAAUCCACAUG   103 Target Full Sequence	1.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:80   AUCCAAUCUCACUCAAUCCACAUG   103 Target Full Sequence	1.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:88   AUCCAAUCUCACUCAAUCCACAUG   111 Target Full Sequence	1.0	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:88   AUCCAAUCUCACUCAAUCCACAUG   111 Target Full Sequence	1.0	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:88   AUCCAAUCUCACUCAAUCCACAUG   111 Target Full Sequence	1.0	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:92   AUCCAAUCUCACUCAAUCCACAUG   115 Target Full Sequence	1.0	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:92   AUCCAAUCUCACUCAAUCCACAUG   115 Target Full Sequence	1.0	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:92   AUCCAAUCUCACUCAAUCCACAUG   115 Target Full Sequence	1.0	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:99   AUUCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:99   AUUCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:99   AUUCAAUCCCACUCAAUCCACAUG   122 Target Full Sequence	0.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:99   AUCCAAUCCCACUUAAUCCACAUG   122 Target Full Sequence	1.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:99   AUCCAAUCCCACUUAAUCCACAUG   122 Target Full Sequence	1.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:99   AUCCAAUCCCACUUAAUCCACAUG   122 Target Full Sequence	1.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:92   AUUCAAUCCCACUCAAUCCACAUG   115 Target Full Sequence	0.0	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:456   AUCCAAUCUCACUCAAUCCACAUG   479 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:247   AUCCAAUCUCACUCAAUCCACAUG   270 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:1125   AUUCAAUCCCACUCAAUCCACAUG   1148 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:1125   AUUCAAUCCCACUCAAUCCACAUG   1148 Target Full Sequence	0.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:1129   AUCCAAUCCCGCUCAAUCCACAUG   1152 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:1129   AUCCAAUCCCGCUCAAUCCACAUG   1152 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||=|*||||||||||||||||||| targets:1416   AUUCAAUCCCACUCAAUCCACAUG   1439 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:1620   AUCCAAUCCCGCUCAAUCCACAUG   1643 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:1887   AUCCAAUCCCGCUCAAUCCACAUG   1910 Target Full Sequence	1.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:1953   AUCCAAUCCCGCUCAAUCCACAUG   1976 Target Full Sequence	1.0	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:2048   AUCCAAUCCCGCUCAAUCCACAUG   2071 Target Full Sequence	1.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:2030   AUCCAAUCCCGCUCAAUCCACAUG   2053 Target Full Sequence	1.0	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2081   AUCCAAUCUCACUCAAUCCACAUG   2104 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:2141   AUCCAAUCCCGCUCAAUCCACAUG   2164 Target Full Sequence	1.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2153   AUCCAAUCUCACUCAAUCCACAUG   2176 Target Full Sequence	1.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2154   AUCCAAUCUCACUCAAUCCACAUG   2177 Target Full Sequence	1.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2282   AUCCAAUCUCACUCAAUCCACAUG   2305 Target Full Sequence	1.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2289   AUCCAAUCUCACUCAAUCCACAUG   2312 Target Full Sequence	1.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||||||||||||||| targets:2349   AUCCAAUCUCACUCAAUCCACAUG   2372 Target Full Sequence	1.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:2801   AUCCAAUCCCGCUCAAUCCACAUG   2824 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:2905   AUCCAAUCCCGCUCAAUCCACAUG   2928 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||=||||||||||||| targets:61   AUCCAAUCCCGCUCAAUCCACAUG   84 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:7146   AUCCAAUCCCACUUAAUCCACAUG   7169 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:7250   AUCCAAUCCCACUUAAUCCACAUG   7273 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||||||=|||||||||| targets:7261   AUCCAAUCCCACUUAAUCCACAUG   7284 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||==||||||||||||| targets:80   AUCCAAUCCUGCUCAAUCCACAUG   103 Target Full Sequence	2.0	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||==||||||||||||| targets:80   AUCCAAUCCUGCUCAAUCCACAUG   103 Target Full Sequence	2.0	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||==||||||||||||| targets:80   AUCCAAUCCUGCUCAAUCCACAUG   103 Target Full Sequence	2.0	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||=|||||||||||| targets:99   AUCCAAUCUCAUUCAAUCCACAUG   122 Target Full Sequence	2.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||=|||||||||||| targets:99   AUCCAAUCUCAUUCAAUCCACAUG   122 Target Full Sequence	2.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=||=|||||||||||| targets:99   AUCCAAUCUCAUUCAAUCCACAUG   122 Target Full Sequence	2.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||==||||||||||||| targets:879   AUCCAAUCCUGCUCAAUCCACAUG   902 Target Full Sequence	2.0	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||||||||||||||=||| targets:1366   AUCUAAUCCCACUCAAUCCAUAUG   1389 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||||||||||||||=||| targets:2083   AUCUAAUCCCACUCAAUCCAUAUG   2106 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||=||||||||||||||| targets:3395   AUCUAAUCUCACUCAAUCCACAUG   3418 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==**|=||*||||||||||||| targets:3469   AUUUAUUUCCUCUCAAUCCACAUG   3492 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||=||||||||||||||| targets:3408   AUCUAAUCUCACUCAAUCCACAUG   3431 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==**|=||*||||||||||||| targets:3482   AUUUAUUUCCUCUCAAUCCACAUG   3505 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||=||||||||||||||| targets:3439   AUCUAAUCUCACUCAAUCCACAUG   3462 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==**|=||*||||||||||||| targets:3513   AUUUAUUUCCUCUCAAUCCACAUG   3536 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||||||||||=||* targets:99   AUCCAAUCCCACUCAAUCCAUAUA   122 Target Full Sequence	2.5	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||||||||||=||* targets:99   AUCCAAUCCCACUCAAUCCAUAUA   122 Target Full Sequence	2.5	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||||||||||=||* targets:99   AUCCAAUCCCACUCAAUCCAUAUA   122 Target Full Sequence	2.5	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:236   AUCCAAUCCUACUCAAUCCACAUA   259 Target Full Sequence	2.0	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:1014   AUCCAAUCCUACUCAAUCCACAUA   1037 Target Full Sequence	2.0	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||||||||||=||* targets:1467   AUCCAAUCCCACUCAAUCCAUAUA   1490 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||||||||||=||* targets:1467   AUCCAAUCCCACUCAAUCCAUAUA   1490 Target Full Sequence	2.5	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:3481   AUCCAAUCCUACUCAAUCCACAUA   3504 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:3467   AUCCAAUCCUACUCAAUCCACAUA   3490 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:3749   AUCCAAUCCUACUCAAUCCACAUA   3772 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*||||=|||||||||||||* targets:3754   AUCCAAUCCUACUCAAUCCACAUA   3777 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:75   AUCCAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:75   AUCCAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:75   AUCCAAUCCCACCCAAUCCACAUG   98 Target Full Sequence	1.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
AY112141.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||=|||||||||=||||| targets:229   AUCUAAUCUCACUCAAUCUACAUG   252 Target Full Sequence	2.5	Zea mays CL24213_1 mRNA sequence	NA	coding protein	psRNATarget
EU968756.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==*||||=|||||||||||||| targets:927   AUUUAAUCCUACUCAAUCCACAUG   950 Target Full Sequence	1.0	Zea mays clone 323940 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279564.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==*||||=|||||||||||||| targets:1248   AUUUAAUCCUACUCAAUCCACAUG   1271 Target Full Sequence	1.0	Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA	NA	coding protein	psRNATarget
EU960921.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||==*||||=|||||||||||||| targets:1251   AUUUAAUCCUACUCAAUCCACAUG   1274 Target Full Sequence	1.0	Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:186   AUCCAAUCCCACACAAUCCACAUG   209 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:1812   AUCCAAUCCCACCCAAUCCACAUG   1835 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||||||*||||||||||| targets:1828   AUCCAAUCCCACCCAAUCCACAUG   1851 Target Full Sequence	1.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   UAG----GCUAGGGUGAGUUAGGUGUAC   1   |||----|*||||||||||||||||||| targets:4054   AUCGACUCAAUCCCACUCAAUCCACAUG   4081 Target Full Sequence	0.0	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=|||*||||||||||| targets:1022   AUCCAAUCUCACCCAAUCCACAUG   1045 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=|||*||||||||||| targets:1055   AUCCAAUCUCACCCAAUCCACAUG   1078 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035134.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=|||*||||||||||| targets:1217   AUCCAAUCUCACCCAAUCCACAUG   1240 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   ||||*|||=|||*||||||||||| targets:1217   AUCCAAUCUCACCCAAUCCACAUG   1240 Target Full Sequence	2.5	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |||=*|||||||*||||||||||| targets:1528   AUCUAAUCCCACCCAAUCCACAUG   1551 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
EU948930.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |*||*||=||||||||||=||||| targets:421   ACCCAAUUCCACUCAAUCUACAUG   444 Target Full Sequence	2.5	Zea mays clone 390579 mRNA sequence	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |*=|*|||=||||||||||||||| targets:1444   ACUCAAUCUCACUCAAUCCACAUG   1467 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |*=|*|||=||||||||||||||| targets:1444   ACUCAAUCUCACUCAAUCCACAUG   1467 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
XM_020546135.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |*||*||=||||||||||=||||| targets:3133   ACCCAAUUCCACUCAAUCUACAUG   3156 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546136.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   |*||*||=||||||||||=||||| targets:3280   ACCCAAUUCCACUCAAUCUACAUG   3303 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103642139), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   UAGGCUAGGGUGAGUUAGGUGUAC   1   **=|||||||*|||||||||=||| targets:28   CCUCGAUCCCCCUCAAUCCAUAUG   51 Target Full Sequence	2.5	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget