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BaseInfo

ncRNA ID novel_zma_miR2460
Species Zea mays
Class miRNA
Genome position Chr4:55120251-55120331 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 58 - AUCUUAGGUUUCUACACAUAGUGU - 81
Stem-loop(if miRNA) --                     -GA  -     U   A U
  ACUAUGUGUAGAAACCUAAGA   UC CACAU GAA C U
  |||||||||||||||||||||   || ||||| ||| | U
  UGAUACACAUCUUUGGAUUCU   AG GUGUA UUU G A
UG                     AUA  U     U   A U
Stem-loop sequence ACUAUGUGUAGAAACCUAAGAGAUCCACAUUGAAACUUUAUGAUUUUAUGUGUGAAUAUCUUAGGUUUCUACACAUAGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163709.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||||||||||||||||||||||*
targets:9   ACACUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1373 from Patent EP2559767 NA coding protein psRNATarget
HI403248.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||||||||||||||||||||||*
targets:9   ACACUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1373 from Patent EP2074227 NA coding protein psRNATarget
LQ235378.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||||||||||||||||||||||*
targets:9   ACACUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1373 from Patent EP2985353 NA coding protein psRNATarget
HI403210.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1335 from Patent EP2074227 NA coding protein psRNATarget
LQ235324.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1319 from Patent EP2985353 NA coding protein psRNATarget
JB163655.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1319 from Patent EP2559767 NA coding protein psRNATarget
JB163654.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1318 from Patent EP2559767 NA coding protein psRNATarget
HI403236.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1361 from Patent EP2074227 NA coding protein psRNATarget
LQ235366.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1361 from Patent EP2985353 NA coding protein psRNATarget
LQ235337.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1332 from Patent EP2985353 NA coding protein psRNATarget
HI403207.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1332 from Patent EP2074227 NA coding protein psRNATarget
LQ235375.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1370 from Patent EP2985353 NA coding protein psRNATarget
LQ235323.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1318 from Patent EP2985353 NA coding protein psRNATarget
HI403193.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1318 from Patent EP2074227 NA coding protein psRNATarget
HI403249.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1374 from Patent EP2074227 NA coding protein psRNATarget
LQ235340.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1335 from Patent EP2985353 NA coding protein psRNATarget
JB163671.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1335 from Patent EP2559767 NA coding protein psRNATarget
LQ235368.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1363 from Patent EP2985353 NA coding protein psRNATarget
JB163697.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1361 from Patent EP2559767 NA coding protein psRNATarget
HI403194.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1319 from Patent EP2074227 NA coding protein psRNATarget
JB163710.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1374 from Patent EP2559767 NA coding protein psRNATarget
JB163699.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1363 from Patent EP2559767 NA coding protein psRNATarget
LQ235379.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1374 from Patent EP2985353 NA coding protein psRNATarget
HI403238.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1363 from Patent EP2074227 NA coding protein psRNATarget
HI403245.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1370 from Patent EP2074227 NA coding protein psRNATarget
JB163668.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1332 from Patent EP2559767 NA coding protein psRNATarget
JB163706.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=|||||||||||||||||||*
targets:9   ACAUUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1370 from Patent EP2559767 NA coding protein psRNATarget
HI403222.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||||||||||||||||*
targets:80   GCACUAUGUGUAGAAACCUAAGAG   103

1.0 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
LQ235352.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||||||||||||||||*
targets:80   GCACUAUGUGUAGAAACCUAAGAG   103

1.0 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163683.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||||||||||||||||*
targets:80   GCACUAUGUGUAGAAACCUAAGAG   103

1.0 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235339.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=|||||||||||||||||||||*
targets:86   AUACUAUGUGUAGAAACCUAAGAG   109

1.0 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
JB163670.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=|||||||||||||||||||||*
targets:86   AUACUAUGUGUAGAAACCUAAGAG   109

1.0 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
HI403209.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=|||||||||||||||||||||*
targets:86   AUACUAUGUGUAGAAACCUAAGAG   109

1.0 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
JB163714.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||*|||||||||||||||||||*
targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1378 from Patent EP2559767 NA coding protein psRNATarget
LQ235383.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||*|||||||||||||||||||*
targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1378 from Patent EP2985353 NA coding protein psRNATarget
HI403253.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||*|||||||||||||||||||*
targets:9   ACAGUAUGUGUAGAAACCUAAGAG   32

1.0 Sequence 1378 from Patent EP2074227 NA coding protein psRNATarget
HI403169.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=||||||||*||||||||||||*
targets:7   AUACUAUGUGCAGAAACCUAAGAG   30

2.0 Sequence 1294 from Patent EP2074227 NA coding protein psRNATarget
LQ235299.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=||||||||*||||||||||||*
targets:7   AUACUAUGUGCAGAAACCUAAGAG   30

2.0 Sequence 1294 from Patent EP2985353 NA coding protein psRNATarget
JB163630.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |=||||||||*||||||||||||*
targets:7   AUACUAUGUGCAGAAACCUAAGAG   30

2.0 Sequence 1294 from Patent EP2559767 NA coding protein psRNATarget
LQ235332.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1327 from Patent EP2985353 NA coding protein psRNATarget
JB163663.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1327 from Patent EP2559767 NA coding protein psRNATarget
HI403202.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1327 from Patent EP2074227 NA coding protein psRNATarget
LQ235091.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=||||||||*||||||||||*
targets:10   ACAUUAUGUGUAUAAACCUAAGAG   33

2.5 Sequence 1086 from Patent EP2985353 NA coding protein psRNATarget
HI402961.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=||||||||*||||||||||*
targets:10   ACAUUAUGUGUAUAAACCUAAGAG   33

2.5 Sequence 1086 from Patent EP2074227 NA coding protein psRNATarget
JB163422.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  |||=||||||||*||||||||||*
targets:10   ACAUUAUGUGUAUAAACCUAAGAG   33

2.5 Sequence 1086 from Patent EP2559767 NA coding protein psRNATarget
JB163664.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1328 from Patent EP2559767 NA coding protein psRNATarget
LQ235367.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1362 from Patent EP2985353 NA coding protein psRNATarget
LQ235380.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1375 from Patent EP2985353 NA coding protein psRNATarget
LQ235356.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1351 from Patent EP2985353 NA coding protein psRNATarget
JB163687.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1351 from Patent EP2559767 NA coding protein psRNATarget
JB163711.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1375 from Patent EP2559767 NA coding protein psRNATarget
LQ235326.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1321 from Patent EP2985353 NA coding protein psRNATarget
HI403237.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1362 from Patent EP2074227 NA coding protein psRNATarget
JB163698.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1362 from Patent EP2559767 NA coding protein psRNATarget
JB163657.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1321 from Patent EP2559767 NA coding protein psRNATarget
LQ235362.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1357 from Patent EP2985353 NA coding protein psRNATarget
JB163713.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1377 from Patent EP2559767 NA coding protein psRNATarget
HI403200.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1325 from Patent EP2074227 NA coding protein psRNATarget
HI403226.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1351 from Patent EP2074227 NA coding protein psRNATarget
HI403250.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1375 from Patent EP2074227 NA coding protein psRNATarget
HI403203.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1328 from Patent EP2074227 NA coding protein psRNATarget
HI403232.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1357 from Patent EP2074227 NA coding protein psRNATarget
LQ235330.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1325 from Patent EP2985353 NA coding protein psRNATarget
JB163661.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1325 from Patent EP2559767 NA coding protein psRNATarget
LQ235333.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1328 from Patent EP2985353 NA coding protein psRNATarget
LQ235382.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1377 from Patent EP2985353 NA coding protein psRNATarget
JB163693.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1357 from Patent EP2559767 NA coding protein psRNATarget
HI403252.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1377 from Patent EP2074227 NA coding protein psRNATarget
HI403196.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|||||||||||*||||||||||*
targets:12   GCACUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1321 from Patent EP2074227 NA coding protein psRNATarget
JB163695.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||*|||||||||||||*
targets:12   GCACUAUGUUUAGAAACCUAAGAG   35

2.0 Sequence 1359 from Patent EP2559767 NA coding protein psRNATarget
LQ235364.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||*|||||||||||||*
targets:12   GCACUAUGUUUAGAAACCUAAGAG   35

2.0 Sequence 1359 from Patent EP2985353 NA coding protein psRNATarget
HI403234.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =||||||||*|||||||||||||*
targets:12   GCACUAUGUUUAGAAACCUAAGAG   35

2.0 Sequence 1359 from Patent EP2074227 NA coding protein psRNATarget
HI402968.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:12   GCGCUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1093 from Patent EP2074227 NA coding protein psRNATarget
LQ235098.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:12   GCGCUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1093 from Patent EP2985353 NA coding protein psRNATarget
JB163429.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:12   GCGCUAUGUGUACAAACCUAAGAG   35

2.5 Sequence 1093 from Patent EP2559767 NA coding protein psRNATarget
JB163681.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:80   GCGCUAUGUGUACAAACCUAAGAG   103

2.5 Sequence 1345 from Patent EP2559767 NA coding protein psRNATarget
HI403220.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:80   GCGCUAUGUGUACAAACCUAAGAG   103

2.5 Sequence 1345 from Patent EP2074227 NA coding protein psRNATarget
LQ235350.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  =|=|||||||||*||||||||||*
targets:80   GCGCUAUGUGUACAAACCUAAGAG   103

2.5 Sequence 1345 from Patent EP2985353 NA coding protein psRNATarget
LQ242225.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  ===|||||||||*||||||||||*
targets:9   GUGCUAUGUGUACAAACCUAAGAG   32

2.5 Sequence 8220 from Patent EP2985353 NA coding protein psRNATarget
HI410095.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  ===|||||||||*||||||||||*
targets:9   GUGCUAUGUGUACAAACCUAAGAG   32

2.5 Sequence 8220 from Patent EP2074227 NA coding protein psRNATarget
JB170556.1
ncRNA:24   UGUGAUACACAUCUUUGGAUUCUA   1
  ===|||||||||*||||||||||*
targets:9   GUGCUAUGUGUACAAACCUAAGAG   32

2.5 Sequence 8220 from Patent EP2559767 NA coding protein psRNATarget
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