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BaseInfo

ncRNA ID osa-miR5798
Species Oryza sativa
Class miRNA
Genome position Chr7:6672120-6672276 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CUGGACUACAAGAUCCCGGAU - 31
Stem-loop(if miRNA) UU    -  C      --UG  A     CGG   -     A  GCAU      AGCUU  GCGUUGUGGUGGCAGUACUCUCUAAG
  GAGA GG AGUCCG    CU UGUGG   UCA UAGGG GC    UUGGCA     GA                          U
  |||| || ||||||    || |||||   ||| ||||| ||    ||||||     ||
  CUCU CC UUAGGC    GA ACAUC   GGU GUCCC CG    GAUCGU     UG                          A
CC    A  -      CCUA  -     --A   C     A  ----      -----  AAAGCAUUCUUGUGACGUUACCUUUA
Stem-loop sequence UUGAGAGGCAGUCCGUGCUAUGUGGCGGUCAUAGGGAGCGCAUUUGGCAAGCUUGAGCGUUGUGGUGGCAGUACUCUCUAAGUAAUUUCCAUUGCAGUGUUCUUACGAAAGUUGCUAGGCACCCUGCUGGACUACAAGAUCCCGGAUUCCAUCUCCC

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).