ncRNA ID | osa-miR5798 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr7:6672120-6672276 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - CUGGACUACAAGAUCCCGGAU - 31 |
Stem-loop(if miRNA) |
UU    -  C      --UG  A     CGG   -     A  GCAU      AGCUU  GCGUUGUGGUGGCAGUACUCUCUAAG   GAGA GG AGUCCG    CU UGUGG   UCA UAGGG GC    UUGGCA     GA                          U   |||| || ||||||    || |||||   ||| ||||| ||    ||||||     ||   CUCU CC UUAGGC    GA ACAUC   GGU GUCCC CG    GAUCGU     UG                          A CC    A  -      CCUA  -     --A   C     A  ----      -----  AAAGCAUUCUUGUGACGUUACCUUUA |
Stem-loop sequence | UUGAGAGGCAGUCCGUGCUAUGUGGCGGUCAUAGGGAGCGCAUUUGGCAAGCUUGAGCGUUGUGGUGGCAGUACUCUCUAAGUAAUUUCCAUUGCAGUGUUCUUACGAAAGUUGCUAGGCACCCUGCUGGACUACAAGAUCCCGGAUUCCAUCUCCC |
1 | PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011). |