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BaseInfo

ncRNA ID	novel_zma_miR2458
Species	Zea mays
Class	miRNA
Genome position	Chr1:177543043-177543093 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	23
Mature sequence(if miRNA)	1 - GAAGUGGAUUGAGGGAGAUUGGA - 23
Stem-loop(if miRNA)	--GAA            A     GA      GUGGAUUGAGGG GAUUG  G      |||||||||||| |||||  G      CAUCUAACUCUC CUAAU  G AUCCA            C     AG
Stem-loop sequence	GAAGUGGAUUGAGGGAGAUUGGAGGGGAUAAUCCCUCUCAAUCUACACCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163452.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |==|||||||||||||||*|||| targets:79   UUUAAUCUCCCUCAAUCCCCUUC   101 Target Full Sequence	1.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |==|||||||||||||||*|||| targets:79   UUUAAUCUCCCUCAAUCCCCUUC   101 Target Full Sequence	1.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |==|||||||||||||||*|||| targets:79   UUUAAUCUCCCUCAAUCCCCUUC   101 Target Full Sequence	1.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |||||||*||||||||||||*|| targets:1599   UCCAAUCCCCCUCAAUCCACCUC   1621 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |||||||*||||||||||||*|| targets:1599   UCCAAUCCCCCUCAAUCCACCUC   1621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ082720.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |==||||*|*||||||||||||= targets:70   UUUAAUCCCACUCAAUCCACUUU   92 Target Full Sequence	3.0	TSA: Zea mays contig18363, mRNA sequence	NA	coding protein	psRNATarget
BT066485.2	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   |==||||*|*||||||||||||= targets:74   UUUAAUCCCACUCAAUCCACUUU   96 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ077410.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   **||*||*||||||||||||||| targets:57   CGCAUUCCCCCUCAAUCCACUUC   79 Target Full Sequence	2.0	TSA: Zea mays contig13047, mRNA sequence	NA	coding protein	psRNATarget
NM_001149312.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   **||*||*||||||||||||||| targets:57   CGCAUUCCCCCUCAAUCCACUUC   79 Target Full Sequence	2.0	Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA	NA	coding protein	psRNATarget
EU954524.1	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   **||*||*||||||||||||||| targets:57   CGCAUUCCCCCUCAAUCCACUUC   79 Target Full Sequence	2.0	Zea mays clone 1469353 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681548.2	ncRNA:23   AGGUUAGAGGGAGUUAGGUGAAG   1   **||*||*||||||||||||||| targets:65   CGCAUUCCCCCUCAAUCCACUUC   87 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA	NA	coding protein	psRNATarget