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BaseInfo

ncRNA ID novel_zma_miR2454
Species Zea mays
Class miRNA
Genome position Chr4:49016133-49016302 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647390
Length 24
Mature sequence(if miRNA) 1 - ACUGGUGGUUAUCUUAACACAACC - 24
Stem-loop(if miRNA) --                                                          U  AACACC           A   U
  ACUGGUGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUG GU      AACCGCCAGUG AAA U
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      ||||||||||| |||
  UGACCGCCAAUAGAAUUGUGUUGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAAU CA      UUGGCGGUCAC UUU G
GG                                                          U  AUUCUA           C   A
Stem-loop sequence ACUGGUGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUGUGUAACACCAACCGCCAGUGAAAAUUGAUUUCCACUGGCGGUUAUCUUAACUUAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUGUGUUAAGAUAACCGCCAGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT063235.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:272   GGAAUUGUUAUGGUAACCACCAGU   295

2.5 Zea mays full-length cDNA clone ZM_BFc0041B21 mRNA, complete cds NA coding protein psRNATarget
BT063734.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:476   GGAAUUGUUAUGGUAACCACCAGU   499

2.5 Zea mays full-length cDNA clone ZM_BFc0101P15 mRNA, complete cds NA coding protein psRNATarget
BT068916.2
ncRNA:24   CCAACACAAUUCUAUUGGUGGUCA   1
  ||***|||||*|=|||||||||||
targets:273   GGAAUUGUUAUGGUAACCACCAGU   296

2.5 Zea mays full-length cDNA clone ZM_BFb0272E21 mRNA, complete cds NA coding protein psRNATarget