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BaseInfo

ncRNA ID	novel_zma_miR2449
Species	Zea mays
Class	miRNA
Genome position	Chr9:22847889-22848030 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - ACGGACUGUCUGGUGUGCACCGGA - 24
Stem-loop(if miRNA)	--A     U        UG -          -  CCAGUGUGCCAACUACCACGAAUCUGCAACGGUCAUCU    CGGAC GUCUGGUG  C ACCGGACAGU GU                                      G    ||||| ||||||||  | |||||||||| ||    GCUUG CAGGCCAC  G UGGCCUGUCA UG                                      C GUA     U        GU G          G  ACAUCGUACAGGCCACGCCUAGAGGAAACAUUAAACCG
Stem-loop sequence	ACGGACUGUCUGGUGUGCACCGGACAGUGUCCAGUGUGCCAACUACCACGAAUCUGCAACGGUCAUCUGCGCCAAAUUACAAAGGAGAUCCGCACCGGACAUGCUACAGUGACUGUCCGGUGGUGCACCGGACUGUUCGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242178.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:107   UCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
HI410048.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:107   UCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
JB170509.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:107   UCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	2.5	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:468   UCCGGUGCACACCGGACAGUCCGG   491 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:598   UCCGGUGCACACCGGACAGUCCGG   621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:740   UCCGGUGCACACCGGACAGUCCGG   763 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:620   UCCGGUGCACACCGGACAGUCCGG   643 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:734   UCCGGUGCACACCGGACAGUCCGG   757 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:837   UCCGGUGCACACCGGACAGUCCGG   860 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:620   UCCGGUGCACACCGGACAGUCCGG   643 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:734   UCCGGUGCACACCGGACAGUCCGG   757 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:837   UCCGGUGCACACCGGACAGUCCGG   860 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:712   UCCGGUGCACACCGGACAGUCCGG   735 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:712   UCCGGUGCACACCGGACAGUCCGG   735 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:281   UCCGGUGCACACCGGACAGUCCGG   304 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:597   UCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:695   UCCGGUGCACACCGGACAGUCCGG   718 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:597   UCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:695   UCCGGUGCACACCGGACAGUCCGG   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:445   UCCGGUGCACACCGGACAGUCCGG   468 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:559   UCCGGUGCACACCGGACAGUCCGG   582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:445   UCCGGUGCACACCGGACAGUCCGG   468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:559   UCCGGUGCACACCGGACAGUCCGG   582 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:407   UCCGGUGCACACCGGACAGUCCGG   430 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |*|||||||||||=|||||||||* targets:293   UACGGUGCACACCGGACAGUCCGG   316 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:1397   UCCGGUGCACACCGGACAGUCCGG   1420 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:4492   UCCGGUGCACACCGGACAGUCCGG   4515 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   AGGCCACGUGUGGUCUGUCAGGCA   1   |||||||||||||=|||||||||* targets:4607   UCCGGUGCACACCGGACAGUCCGG   4630 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AGGCCACGUG-UGGUCUGUCAGGCA   1   ||||||||||-|||||||||||||* targets:723   UCCGGUGCACCACCAGACAGUCCGG   747 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget