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BaseInfo

ncRNA ID	novel_zma_miR2447
Species	Zea mays
Class	miRNA
Genome position	Chr9:78031483-78031621 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	116 - CCGGACUGUCCGGUGCACCACCAA - 139
Stem-loop(if miRNA)	--      U         AC    AA   GU    A   --CACA  -       -CAC   -   CU   CA   CCGGAC GUCCGGUGC  CACC  AUA  GUCC GUG      AG GGAGAAU    UCC GAA  CCU  G   |||||| |||||||||  ||||  |||  |||| |||      || |||||||    ||| |||  |||  C   GGCCUG CAGGUCACG  GUGG  UGU  CAGG CAC      UC CCUCUUG    AGG CUU  GGA  U GU      U         GU    CC   --    C   UUAAUA  G       UAAA   U   -U   UU
Stem-loop sequence	CCGGACUGUCCGGUGCACCACCAAAUAGUGUCCAGUGCACAAGGGAGAAUCACUCCGAACUCCUCAGCUUUAGGUUUCUGGAAAAUGUUCUCCGCUAUAAUUCACCGGACUGUCCGGUGUGGCACUGGACUGUCCGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943461.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||||||||||||||||*|||||| targets:1394   CUGGUGGUGCACCGGACUGUCCGG   1417 Target Full Sequence	1.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
EU943461.1	ncRNA:24   AAC-CACCACGUGGCCUGUCAGGCC   1   *||-|*||*|||||||||*|||||| targets:1173   AUGCGAGGAGCACCGGACUGUCCGG   1197 Target Full Sequence	2.5	Zea mays clone 1624403 mRNA sequence	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||||||||||||||||||| targets:146   CGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	0.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||||||||||||||||||| targets:146   CGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	0.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||||||||||||||||||| targets:146   CGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	0.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:24   AA-CCACCACGUGGCCUGUCAGGCC   1   ||-|||||||||||||||*|||||| targets:1557   UUCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget
BT054171.1	ncRNA:24   AA-CCACCACGUGGCCUGUCAGGCC   1   ||-|||||||||||||||*|||||| targets:1557   UUCGGUGGUGCACCGGACUGUCCGG   1581 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AAC----C-ACCACGUGGCCUGUCAGGCC   1   |||----|-|||||||||||||||||||| targets:815   UUGCUCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	0.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   AACC---ACC-ACGUGGCCUGUCAGGCC   1   *|||---|||-||||||||||||||||| targets:582   CUGGCGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AAC----C-ACCACGUGGCCUGUCAGGCC   1   |||----|-|||||||||||||||||||| targets:815   UUGCUCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   AACC---ACC-ACGUGGCCUGUCAGGCC   1   *|||---|||-||||||||||||||||| targets:582   CUGGCGAUGGGUGCACCGGACAGUCCGG   609 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   |||*|||*|||||||||||||||| targets:172   UUGAUGGCGCACCGGACAGUCCGG   195 Target Full Sequence	1.0	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
EZ071967.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:47   CCGGUGGUGCACCGGACUGUCCGG   70 Target Full Sequence	1.5	TSA: Zea mays contig07604, mRNA sequence	NA	coding protein	psRNATarget
EZ105730.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:59   CCGGUGGUGCACCGGACUGUCCGG   82 Target Full Sequence	1.5	TSA: Zea mays contig41388, mRNA sequence	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	1.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	1.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:108   CCGGUGGUGCACCGGACUGUCCGG   131 Target Full Sequence	1.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
BT037301.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:978   CCGGUGGUGCACCGGACUGUCCGG   1001 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001309905.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1150   CCGGUGGUGCACCGGACUGUCCGG   1173 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA	NA	coding protein	psRNATarget
EZ109324.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:33   CCGGUGGUGCACCGGACUGUCCGG   56 Target Full Sequence	1.5	TSA: Zea mays contig44983, mRNA sequence	NA	coding protein	psRNATarget
EU960150.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1320   CCGGUGGUGCACCGGACUGUCCGG   1343 Target Full Sequence	1.5	Zea mays clone 222169 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175099.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA	NA	coding protein	psRNATarget
BT064005.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1409   CCGGUGGUGCACCGGACUGUCCGG   1432 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||||||||||||||||=|| targets:404   CGAGUGGUGCACCGGACAGUCUGG   427 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||||||||||||| targets:827   AGCCUGGUGCACCGGACAGUCCGG   850 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||||||||||||||||||||** targets:30   CCGGUGGUGCACCGGACAGUCCAA   53 Target Full Sequence	2.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||||||||||||||||||||** targets:30   CCGGUGGUGCACCGGACAGUCCAA   53 Target Full Sequence	2.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||||||||||||||||||||** targets:30   CCGGUGGUGCACCGGACAGUCCAA   53 Target Full Sequence	2.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget
EZ103080.1	ncRNA:24   AACC-------ACCACGUGGCCUGU-CAGGCC   1   ||||-------||||||||||||||-|||||| targets:53   UUGGAGUCCUCUGGUGCACCGGACAUGUCCGG   84 Target Full Sequence	3.0	TSA: Zea mays contig38737, mRNA sequence	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   |***|||||||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	0.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||**||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   |***|||||||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	0.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||**||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   |***|||||||||||||||||||| targets:90   UCCCUGGUGCACCGGACAGUCCGG   113 Target Full Sequence	0.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||**||||||||||||||| targets:9   CCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
EU962912.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:420   CCGGUGGUGCACCGGACUGUCCGG   443 Target Full Sequence	1.5	Zea mays clone 246496 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065862.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175661.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:1288   CCGGUGGUGCACCGGACUGUCCGG   1311 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA	NA	coding protein	psRNATarget
EU943181.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||||||||||||*|||||| targets:929   CGGGUGGUGCACCGGACUGUCCGG   952 Target Full Sequence	1.5	Zea mays clone 1580698 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||*|||||||||||||||| targets:177   CGGGUGGAGCACCGGACAGUCCGG   200 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||||||||||||| targets:760   GCCCUGGUGCACCGGACAGUCCGG   783 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AAC--C--ACCACGUGGCCUGUCAGGCC   1   |||--|--|||*||||||||||||=||| targets:409   UUGUCGCAUGGCGCACCGGACAGUUCGG   436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||||*|*||||||||||||||| targets:679   CCGGUGCUUCACCGGACAGUCCGG   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   AAC--CA--CCACGUGGCCUGUCAGGCC   1   *||--||--||||||||||||||||||| targets:579   CUGUCGUCGGGUGCACCGGACAGUCCGG   606 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   AAC--CA--CCACGUGGCCUGUCAGGCC   1   *||--||--||||||||||||||||||| targets:131   CUGUCGUCGGGUGCACCGGACAGUCCGG   158 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||||||**||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||||||**||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||||||**||||||||||||||| targets:28   CUGGUGGCCCACCGGACAGUCCGG   51 Target Full Sequence	2.0	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AACC-------ACCACGUGGCCUGUCAGGCC   1   ||||-------|||*|||||||||||||||| targets:591   UUGGGAGACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:502   CGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AACC-------ACCACGUGGCCUGUCAGGCC   1   ||||-------|||*|||||||||||||||| targets:591   UUGGGAGACGUUGGCGCACCGGACAGUCCGG   621 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:502   CGCCUGGCGCACCGGACAGUCCGG   525 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT038885.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||||||=|||||| targets:931   CAAAUGGUGCACCGGACGGUCCGG   954 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968231.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||||||=|||||| targets:1302   CAAAUGGUGCACCGGACGGUCCGG   1325 Target Full Sequence	1.5	Zea mays clone 317172 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*|||||||||||||||| targets:488   CGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*|||||||||||||||| targets:488   CGAGUGGCGCACCGGACAGUCCGG   511 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:777   AGCCUGGCGCACCGGACAGUCCGG   800 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   AACC-ACCACGUGGCCUGUCAGGCC   1   ||||-|||*|||||*|||||||||| targets:481   UUGGGUGGCGCACCAGACAGUCCGG   505 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
JB167053.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||*||||||||||||||||=|* targets:2   CAGGAGGUGCACCGGACAGUCUGA   25 Target Full Sequence	2.5	Sequence 4717 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238722.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||*||||||||||||||||=|* targets:2   CAGGAGGUGCACCGGACAGUCUGA   25 Target Full Sequence	2.5	Sequence 4717 from Patent EP2985353	NA	coding protein	psRNATarget
HI406592.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **||*||||||||||||||||=|* targets:2   CAGGAGGUGCACCGGACAGUCUGA   25 Target Full Sequence	2.5	Sequence 4717 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241219.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*||||=||||||||||| targets:64   CGAGUGGCGCACUGGACAGUCCGG   87 Target Full Sequence	2.5	Sequence 7214 from Patent EP2985353	NA	coding protein	psRNATarget
HI409089.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*||||=||||||||||| targets:64   CGAGUGGCGCACUGGACAGUCCGG   87 Target Full Sequence	2.5	Sequence 7214 from Patent EP2074227	NA	coding protein	psRNATarget
JB169550.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*||||=||||||||||| targets:64   CGAGUGGCGCACUGGACAGUCCGG   87 Target Full Sequence	2.5	Sequence 7214 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   AAC--C---ACCACGUGGCCUGUCAGGCC   1   |||--|---|||*|||||||||||||||| targets:573   UUGCAGAUCUGGCGCACCGGACAGUCCGG   601 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   AAC--C---ACCACGUGGCCUGUCAGGCC   1   |||--|---|||*|||||||||||||||| targets:573   UUGCAGAUCUGGCGCACCGGACAGUCCGG   601 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||**||||||||||||||| targets:93   CCGGUGGCACACCGGACAGUCCGG   116 Target Full Sequence	2.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:20   ACCACGUGGCCUGUCAGGCC   1   |||*|||||||||||||||| targets:1   UGGCGCACCGGACAGUCCGG   20 Target Full Sequence	1.0	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:88   CGCAUGGCGCACCGGACAGUCCGG   111 Target Full Sequence	1.0	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||*|||||||||*|||||| targets:737   CCGGUGGCGCACCGGACUGUCCGG   760 Target Full Sequence	2.5	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||**||||||||||||||| targets:796   CCGGUGGCACACCGGACAGUCCGG   819 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:472   CGCAUGGCGCACCGGACAGUCCGG   495 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||*|||||||||*|||||| targets:1543   CCGGUGGCGCACCGGACUGUCCGG   1566 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   AAC-----CACCACGUGGCCUGUCAGGCC   1   |||-----|-||*|||||||||||||||| targets:325   UUGAGCACG-GGCGCACCGGACAGUCCGG   352 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   AAC-----CACCACGUGGCCUGUCAGGCC   1   |||-----|-||*|||||||||||||||| targets:325   UUGAGCACG-GGCGCACCGGACAGUCCGG   352 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548733.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||*|||||||||*|||||| targets:2190   CCGGUGGCGCACCGGACUGUCCGG   2213 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA	NA	coding protein	psRNATarget
BT054293.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   **|||||*|||||||||*|||||| targets:2196   CCGGUGGCGCACCGGACUGUCCGG   2219 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:373   CGUCUGGCGCACCGGACAGUCCGG   396 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||*|||||||||| targets:494   CGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||*|||**||||||||||||||| targets:686   CUGUUGGCUCACCGGACAGUCCGG   709 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||||||||*|||||||||| targets:494   CGCCUGGUGCACCUGACAGUCCGG   517 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   *||*|||**||||||||||||||| targets:686   CUGUUGGCUCACCGGACAGUCCGG   709 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   AACCACCACG---UGGCCUGUCAGGCC   1   |***||||||---|||||||||||||| targets:1465   UGUCUGGUGCCUCACCGGACAGUCCGG   1491 Target Full Sequence	3.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ****|||*|||||||||||||||| targets:2537   CGACUGGCGCACCGGACAGUCCGG   2560 Target Full Sequence	1.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
HI410005.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*|||||*|||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.5	Sequence 8130 from Patent EP2074227	NA	coding protein	psRNATarget
JB170466.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*|||||*|||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.5	Sequence 8130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242135.1	ncRNA:24   AACCACCACGUGGCCUGUCAGGCC   1   ***||||*|||||*|||||||||| targets:2   CGAGUGGCGCACCAGACAGUCCGG   25 Target Full Sequence	2.5	Sequence 8130 from Patent EP2985353	NA	coding protein	psRNATarget