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BaseInfo

ncRNA ID novel_zma_miR2445
Species Zea mays
Class miRNA
Genome position Chr9:112491106-112491209 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 81 - AAGAAUUGGAAUGAGCACAGCAAC - 104
Stem-loop(if miRNA) --                           C            A   U   AG
  AAGAAUUGGAAUGAGCACAGCAACAAG CAGACGUAGGGU CUA UUU  A
  ||||||||||||||||||||||||||| |||||||||||| ||| |||  A
  UUCUUAACCUUACUCGUGUCGUUGUUC GUCUGCAUCCCA GGU GAA  G
UC                           A            -   U   CA
Stem-loop sequence AAGAAUUGGAAUGAGCACAGCAACAAGCCAGACGUAGGGUACUAUUUUAGAAGACAAGUUGGACCCUACGUCUGACUUGUUGCUGUGCUCAUUCCAAUUCUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544299.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:8   GUUGCUGUGCUCAUUUCAAUUCUU   31

1.5 PREDICTED: Zea mays uncharacterized LOC109942362 (LOC109942362), mRNA NA coding protein psRNATarget
XM_020547088.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:10   GUUGCUGUGCUCAUUUCAAUUCUU   33

1.5 PREDICTED: Zea mays uncharacterized LOC109943584 (LOC109943584), mRNA NA coding protein psRNATarget
XM_008657951.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:15   GUUGCUGUGCUCAUUUCAAUUCUU   38

1.5 PREDICTED: Zea mays uncharacterized LOC103635520 (LOC103635520), mRNA NA coding protein psRNATarget
XM_008665113.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:23   GUUGCUGUGCUCAUUUCAAUUCUU   46

1.5 PREDICTED: Zea mays uncharacterized LOC103641778 (LOC103641778), mRNA NA coding protein psRNATarget
XM_020547251.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:23   GUUGCUGUGCUCAUUUCAAUUCUU   46

1.5 PREDICTED: Zea mays uncharacterized LOC109943754 (LOC109943754), mRNA NA coding protein psRNATarget
XM_008654568.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:18   GUUGCUGUGCUCAUUUCAAUUCUU   41

1.5 PREDICTED: Zea mays uncharacterized LOC103632840 (LOC103632840), mRNA NA coding protein psRNATarget
XM_008664820.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:78   GUUGCUGUGCUCAUUUCAAUUCUU   101

1.5 PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:123   GUUGCUGUGCUCAUUUCAAUUCUU   146

1.5 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020548134.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:100   GUUGCUGUGCUCAUUUCAAUUCUU   123

1.5 PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:280   GUUGCUGUGCUCAUUUCAAUUCUU   303

1.5 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:280   GUUGCUGUGCUCAUUUCAAUUCUU   303

1.5 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:280   GUUGCUGUGCUCAUUUCAAUUCUU   303

1.5 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:284   GUUGCUGUGCUCAUUUCAAUUCUU   307

1.5 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:284   GUUGCUGUGCUCAUUUCAAUUCUU   307

1.5 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:349   GUUGCUGUGCUCAUUUCAAUUCUU   372

1.5 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   CAACGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||=||||||||
targets:1056   GUUGCUGUGCUCAUUUCAAUUCUU   1079

1.5 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_020537629.1
ncRNA:21   CGACACGAGUAAGGUUAAGAA   1
  |||||||||||||||||||||
targets:1   GCUGUGCUCAUUCCAAUUCUU   21

0.0 PREDICTED: Zea mays vicilin-like seed storage protein At2g18540 (LOC109939442), mRNA NA coding protein psRNATarget
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