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BaseInfo

ncRNA ID	osa-miR815c
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:5426885-5426987 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	4 - AAGGGGAUUGAGGAGAUUGGG - 24
Stem-loop(if miRNA)	-C       --      C A      CAUUUAGCC   UUAUAGCCUAUA CUUCUC  UCUCUUC  UCUCCU C CCUCAG         GGC            C ||||||  |||||||  |||||| | ||||||         |||            U GAAGGG  AGAGGAG  AGGGGA G GGAGUU         UGU            U       UU       UU      A A      ---------   GUGGGAAUCUCC
Stem-loop sequence	CUUCUCCUCUCUUCUCUCCUCCACCUCAGCAUUUAGCCGGCUUAUAGCCUAUACUUCCUCUAAGGGUGUGUUUGAGGAGAAGGGGAUUGAGGAGAUUGGGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241141.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||||||||||||||| targets:957   CCCAAUCUCCUCAAUCCCCUU   977 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065099M17, full insert sequence	NA	coding protein	psRNATarget
XM_015779347.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||||||||||||||| targets:2021   CCCAAUCUCCUCAAUCCCCUU   2041 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC107280640), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130(LOC107280640)	coding protein	psRNATarget
AK101492.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||||||||||||||| targets:2112   CCCAAUCUCCUCAAUCCCCUU   2132 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033042P14, full insert sequence	NA	coding protein	psRNATarget
XM_015791501.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||||||||||||||| targets:2125   CCCAAUCUCCUCAAUCCCCUU   2145 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342799 (LOC4342799), transcript variant X3, mRNA	uncharacterized LOC4342799(Os07g0238800)	coding protein	psRNATarget
XM_015782613.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   =|=|||||||||||||||||| targets:969   UCUAAUCUCCUCAAUCCCCUU   989 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339148 (LOC4339148), mRNA	uncharacterized LOC4339148(LOC4339148)	coding protein	psRNATarget
XM_015772715.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||=|||||||||||* targets:179   CCCAAUCUUCUCAAUCCCCUA   199 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group exocyst complex component SEC15A (LOC4331721), transcript variant X2, mRNA	exocyst complex component SEC15A(LOC4331721)	coding protein	psRNATarget
AK067219.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||=|||||||||||* targets:520   CCCAAUCUUCUCAAUCCCCUA   540 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013098I02, full insert sequence	NA	coding protein	psRNATarget
AK068168.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||=|||||||||||* targets:3429   CCCAAUCUUCUCAAUCCCCUC   3449 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013129H24, full insert sequence	NA	coding protein	psRNATarget
XM_015761971.1	ncRNA:21   GGGUUAGAGGAGUUAGGGGAA   1   ||||||||=|||||||||||* targets:3481   CCCAAUCUUCUCAAUCCCCUC   3501 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 2 (LOC4350826), transcript variant X1, mRNA	putative disease resistance RPP13-like protein 2(LOC4350826)	coding protein	psRNATarget

Reference

1	PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"; Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH; FEBS Lett. 580:5111-5116(2006).