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BaseInfo

ncRNA ID novel_zma_miR2435
Species Zea mays
Class miRNA
Genome position Chr4:19625663-19625736 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 51 - CUCCGAUCUUUUUUAUUUGACGUU - 74
Stem-loop(if miRNA) --     A C               U  C    GUAA
  CUCCG U UUUUUUAUUUGACGU UG UAGU    A
  ||||| | ||||||||||||||| || ||||
  GAGGU A AGAAAAUAAACUGCG AC AUCA    A
UG     A A               U  U    AGUU
Stem-loop sequence CUCCGAUCUUUUUUAUUUGACGUUUGCUAGUGUAAAAUUGAACUAUCAUGCGUCAAAUAAAAGAAAAUGGAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069416.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ||||||||||||||||*|||||||
targets:1117   AACGUCAAAUAAAAAAAAUCGGAG   1140

1.5 Zea mays full-length cDNA clone ZM_BFb0119D04 mRNA, complete cds NA coding protein psRNATarget
EZ082762.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||||||||
targets:39   CGCGACAAAUAAAAAAGAUCGGAG   62

0.0 TSA: Zea mays contig18405, mRNA sequence NA coding protein psRNATarget
EZ066467.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*|||||||||||||*|||||
targets:37   CACGACAAAUAAAAAAGAACGGAG   60

1.5 TSA: Zea mays contig02101, mRNA sequence NA coding protein psRNATarget
XM_020546921.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*|||||||||||||*|||||
targets:5887   CACGACAAAUAAAAAAGACCGGAG   5910

1.5 PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA NA coding protein psRNATarget
BT083888.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:1158   GGCGACAAAUAAAAAAGAACGGAG   1181

1.5 Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds NA coding protein psRNATarget
NM_001177150.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:1309   GGCGACAAAUAAAAAAGAACGGAG   1332

1.5 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
NM_001148677.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:1326   GGCGACAAAUAAAAAAGAACGGAG   1349

1.5 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
BT042757.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:1326   GGCGACAAAUAAAAAAGAACGGAG   1349

1.5 Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds NA coding protein psRNATarget
BT054648.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:101   GGCGACAAAUAAAAAAGAACGGAG   124

1.5 Zea mays full-length cDNA clone ZM_BFb0028L02 mRNA, complete cds NA coding protein psRNATarget
XM_020546478.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:2973   GGCGACAAAUAAAAAAGAACGGAG   2996

1.5 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546479.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  ==||*|||||||||||||*|||||
targets:2973   GGCGACAAAUAAAAAAGAACGGAG   2996

1.5 PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA NA coding protein psRNATarget
EZ086823.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:87   UGCGACAAAUAAAAAAGAACGGAG   110

1.5 TSA: Zea mays contig22469, mRNA sequence NA coding protein psRNATarget
EZ077311.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:164   UGCGACAAAUAAAAAAGAACGGAG   187

1.5 TSA: Zea mays contig12948, mRNA sequence NA coding protein psRNATarget
EU968685.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:488   CGCGACAAAUAAAAAAGAGCGGAG   511

1.5 Zea mays clone 323448 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
EU963041.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:476   CGCGACAAAUAAAAAAGAGCGGAG   499

1.5 Zea mays clone 256747 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
EU945472.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:482   UGCGACAAAUAAAAAAGAACGGAG   505

1.5 Zea mays clone 274397 mRNA sequence NA coding protein psRNATarget
EU950009.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:818   CACGAUAAAUAAAAAAGAACGGAG   841

2.5 Zea mays clone 457222 mRNA sequence NA coding protein psRNATarget
BT017193.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1006   CGCGACAAAUAAAAAAGAACGGAG   1029

1.5 Zea mays clone EL01N0371C09.c mRNA sequence NA coding protein psRNATarget
BT017839.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1123   CGCGACAAAUAAAAAAGAACGGAG   1146

1.5 Zea mays clone EL01N0509G09.c mRNA sequence NA coding protein psRNATarget
EU965353.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1074   CGCGACAAAUAAAAAAGAACGGAG   1097

1.5 Zea mays clone 285514 CAPIP1 mRNA, complete cds NA coding protein psRNATarget
EU974460.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1125   CGCGACAAAUAAAAAAGAACGGAG   1148

1.5 Zea mays clone 449839 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001147497.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:969   CGCGACAAAUAAAAAAGAACGGAG   992

1.5 Zea mays CAPIP1 (LOC100273048), mRNA NA coding protein psRNATarget
BT040068.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:969   CGCGACAAAUAAAAAAGAACGGAG   992

1.5 Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds NA coding protein psRNATarget
AY280631.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1119   UGCGACAAAUAAAAAAGAACGGAG   1142

1.5 Zea mays Single myb histone 4 (Smh4) mRNA, complete cds NA coding protein psRNATarget
NM_001157392.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1298   CGCGACAAAUAAAAAAGAGCGGAG   1321

1.5 Zea mays h/ACA ribonucleoprotein complex subunit 3-like protein (LOC100284497), mRNA NA coding protein psRNATarget
EU968577.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1298   CGCGACAAAUAAAAAAGAGCGGAG   1321

1.5 Zea mays clone 322423 h/ACA ribonucleoprotein complex subunit 3-like protein mRNA, complete cds NA coding protein psRNATarget
BT066449.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1343   UGCGACAAAUAAAAAAGAACGGAG   1366

1.5 Zea mays full-length cDNA clone ZM_BFc0165H16 mRNA, complete cds NA coding protein psRNATarget
BT039562.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1274   UGCGACAAAUAAAAAAGAACGGAG   1297

1.5 Zea mays full-length cDNA clone ZM_BFc0030F21 mRNA, complete cds NA coding protein psRNATarget
BT034692.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1335   UGCGACAAAUAAAAAAGAACGGAG   1358

1.5 Zea mays full-length cDNA clone ZM_BFb0011N11 mRNA, complete cds NA coding protein psRNATarget
NM_001137865.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1335   UGCGACAAAUAAAAAAGAACGGAG   1358

1.5 Zea mays hypothetical protein (cl9642_1(176)), mRNA NA coding protein psRNATarget
BT034926.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:956   CGCGACAAAUAAAAAAGAACGGAG   979

1.5 Zea mays full-length cDNA clone ZM_BFb0028J24 mRNA, complete cds NA coding protein psRNATarget
EU960779.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1359   UGCGACAAAUAAAAAAGAACGGAG   1382

1.5 Zea mays clone 228509 mRNA sequence NA coding protein psRNATarget
XM_008678534.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1371   CACGAUAAAUAAAAAAGAACGGAG   1394

2.5 PREDICTED: Zea mays secondary wall NAC transcription factor 2 (NAC115), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001157753.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1571   CGCGACAAAUAAAAAAGAACGGAG   1594

1.5 Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA NA coding protein psRNATarget
EU969922.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1571   CGCGACAAAUAAAAAAGAACGGAG   1594

1.5 Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds NA coding protein psRNATarget
NM_001138169.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1799   CACGAUAAAUAAAAAAGAACGGAG   1822

2.5 Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), mRNA NA coding protein psRNATarget
BT035140.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1799   CACGAUAAAUAAAAAAGAACGGAG   1822

2.5 Zea mays full-length cDNA clone ZM_BFb0042B01 mRNA, complete cds NA coding protein psRNATarget
NM_001147110.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1556   CACGAUAAAUAAAAAAGAACGGAG   1579

2.5 Zea mays secondary wall NAC transcription factor 2 (NAC115), mRNA NA coding protein psRNATarget
BT039113.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1556   CACGAUAAAUAAAAAAGAACGGAG   1579

2.5 Zea mays full-length cDNA clone ZM_BFb0371D07 mRNA, complete cds NA coding protein psRNATarget
BT065511.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1591   CGCGACAAAUAAAAAAGAACGGAG   1614

1.5 Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds NA coding protein psRNATarget
NM_001175535.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1591   CGCGACAAAUAAAAAAGAACGGAG   1614

1.5 Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA NA coding protein psRNATarget
XM_008647454.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1814   CACGAUAAAUAAAAAAGAACGGAG   1837

2.5 PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020539257.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1880   CACGAUAAAUAAAAAAGAACGGAG   1903

2.5 PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020540634.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1694   CGCGACAAAUAAAAAAGAACGGAG   1717

1.5 PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647374.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1904   CACGAUAAAUAAAAAAGAACGGAG   1927

2.5 PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647327.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*=||||||||||||*|||||
targets:1916   CACGAUAAAUAAAAAAGAACGGAG   1939

2.5 PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680960.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1951   CGCGACAAAUAAAAAAGAACGGAG   1974

1.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008680966.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1939   CGCGACAAAUAAAAAAGAACGGAG   1962

1.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA NA coding protein psRNATarget
BT086185.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1939   CGCGACAAAUAAAAAAGAACGGAG   1962

1.5 Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds NA coding protein psRNATarget
XM_008680954.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1950   CGCGACAAAUAAAAAAGAACGGAG   1973

1.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680972.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*|||||
targets:1998   CGCGACAAAUAAAAAAGAACGGAG   2021

1.5 PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA NA coding protein psRNATarget
EZ054538.1
ncRNA:22   GCAGUUUAUUUUUUCUAGCCUC   1
  ||*|||||||||||||*|||||
targets:1   CGCCAAAUAAAAAAGAACGGAG   22

1.5 TSA: Zea mays contig55660, mRNA sequence NA coding protein psRNATarget
XM_020544837.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||*|||||||||||||*||||*
targets:3723   CACGACAAAUAAAAAAGAACGGAU   3746

2.5 PREDICTED: Zea mays uncharacterized LOC103630305 (LOC103630305), mRNA NA coding protein psRNATarget
EZ051209.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:44   CGCGAUAAAUAAAAAAGAACGGAG   67

2.5 TSA: Zea mays contig52329, mRNA sequence NA coding protein psRNATarget
EU940941.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:1781   CGCGAUAAAUAAAAAAGAACGGAG   1804

2.5 Zea mays clone 1218400 mRNA sequence NA coding protein psRNATarget
EU954561.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:2208   CGCGAUAAAUAAAAAAGAACGGAG   2231

2.5 Zea mays clone 1470172 regulatory subunit mRNA, complete cds NA coding protein psRNATarget
NM_001153830.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:2208   CGCGAUAAAUAAAAAAGAACGGAG   2231

2.5 Zea mays regulatory subunit (LOC100280910), mRNA NA coding protein psRNATarget
XM_008645362.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:2279   CGCGAUAAAUAAAAAAGAACGGAG   2302

2.5 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645361.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*=||||||||||||*|||||
targets:2297   CGCGAUAAAUAAAAAAGAACGGAG   2320

2.5 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008668992.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|=|*=||||||||||||*|||||
targets:1126   CAUGAUAAAUAAAAAAGAACGGAG   1149

2.5 PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547411.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|=|*=||||||||||||*|||||
targets:1435   CAUGAUAAAUAAAAAAGAACGGAG   1458

2.5 PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X9, mRNA NA coding protein psRNATarget
EU950207.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*||||*
targets:68   CGCGACAAAUAAAAAAGAACGGAU   91

2.5 Zea mays clone 469419 mRNA sequence NA coding protein psRNATarget
NM_001156209.2
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*||||*
targets:691   UGCGGCAAAUAAAAAAGAACGGAU   714

2.5 Zea mays TOM2B (LOC100283307), mRNA NA coding protein psRNATarget
EU964222.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*||||*
targets:692   UGCGGCAAAUAAAAAAGAACGGAU   715

2.5 Zea mays clone 277065 TOM2B mRNA, complete cds NA coding protein psRNATarget
BT061281.1
ncRNA:24   UUG-CAGUUUAUUUUUUCUAGCCUC   1
  ||=-|*=||||||||||||*|||||
targets:1428   AAUAGAUAAAUAAAAAAGAACGGAG   1452

2.5 Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds NA coding protein psRNATarget
BT016321.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *=||*|||||||||||||*||||*
targets:1465   UGCGGCAAAUAAAAAAGAACGGAU   1488

2.5 Zea mays clone Contig154 mRNA sequence NA coding protein psRNATarget
EZ084539.1
ncRNA:24   UUGCAGUUUAUUUUUUCUAGCCUC   1
  *|||**||||||||||||*|||||
targets:71   CACGAGAAAUAAAAAAGAACGGAG   94

2.5 TSA: Zea mays contig20183, mRNA sequence NA coding protein psRNATarget
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