Search result

BaseInfo

ncRNA ID	osa-miR167d-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:4166295-4166404 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	9 - GAUCAUGCUGUGCAGUUUCAUC - 30
Stem-loop(if miRNA)	U  G  C         -              -----GAGU   UAUUAGGUGAG CAU AG AG UGAAGCUGC CAGCAUGAUCUGAU         GCU           G ||| || || ||||||||| ||||||||||||||         ||| GUG UC UC ACUUUGACG GUCGUACUAGACUA         CCG           G    U  G  U         U              GAAACAAAA   UCAGUUAAGAC
Stem-loop sequence	CAUUAGGAGCUGAAGCUGCCAGCAUGAUCUGAUGAGUGCUUAUUAGGUGAGGGCAGAAUUGACUGCCAAAACAAAGAUCAGAUCAUGCUGUGCAGUUUCAUCUGCUUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243248.1	ncRNA:22   CUACUUUGACGUGUCGUACUAG   1   *|||||=*|||||||||||||* targets:1810   CAUGAAGAUGCACAGCAUGAUG   1831 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100047K09, full insert sequence	NA	coding protein	psRNATarget
XM_015769901.1	ncRNA:22   CUACUUUGACGUGUCGUACUAG   1   *|||||=*|||||||||||||* targets:1860   CAUGAAGAUGCACAGCAUGAUG   1881 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase EDR1 (LOC4328754), transcript variant X1, mRNA	serine/threonine-protein kinase EDR1(LOC4328754)	coding protein	psRNATarget
AK240993.1	ncRNA:22   CUACUUUGACGUGUCGUACUAG   1   *|*||||||||||||||||*|= targets:1467   CAGGAAACUGCACAGCAUGUUU   1488 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065052C17, full insert sequence	NA	coding protein	psRNATarget
XM_015783828.1	ncRNA:22   CUACUUUGACGUGUCGUACUAG   1   *|*||||||||||||||||*|= targets:1505   CAGGAAACUGCACAGCAUGUUU   1526 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337949 (LOC4337949), transcript variant X1, mRNA	uncharacterized LOC4337949(LOC4337949)	coding protein	psRNATarget
XM_015783829.1	ncRNA:22   CUACUUUGACGUGUCGUACUAG   1   *|*||||||||||||||||*|= targets:1505   CAGGAAACUGCACAGCAUGUUU   1526 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337949 (LOC4337949), transcript variant X2, mRNA	uncharacterized LOC4337949(LOC4337949)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).