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BaseInfo

ncRNA ID	novel_zma_miR2425
Species	Zea mays
Class	miRNA
Genome position	Chr8:13224769-13224828 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - GGAGGGGAUUGAUACAGAUUGGAG - 24
Stem-loop(if miRNA)	-- UG GC    -      A          A   C  G  UUGU UCGGUU UUUUCAAUCC U   |  |  |||| |||||| ||||||||||   G  U  GACA AGUUAG GGAGGUUAGG A GA GU -A    U      G          U
Stem-loop sequence	CUGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACAGAUUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548080.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*||||||||||||||| targets:1035   CUCCAAUCCGUAUCAAUCCCCUCC   1058 Target Full Sequence	1.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   =|||||||*||||=|||||||||| targets:1148   UUCCAAUCCGUAUUAAUCCCCUCC   1171 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*||||||||||||||| targets:1073   CUCCAAUCCGUAUCAAUCCCCUCC   1096 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   =|||||||*||||=|||||||||| targets:1186   UUCCAAUCCGUAUUAAUCCCCUCC   1209 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*||||||||||||||| targets:289   CUCCAAUCCGUAUCAAUCCCCUCC   312 Target Full Sequence	1.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*||||||||||||||= targets:772   CUCCAAUCCGUAUCAAUCCCCUCU   795 Target Full Sequence	2.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||=||| targets:824   CUCCAAUCCGUAUCAAUCCCUUCC   847 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||||=| targets:1409   CUCCAAUCCGUAUCAAUCCCCUUC   1432 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||||=| targets:1453   CUCCAAUCCGUAUCAAUCCCCUUC   1476 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||||=| targets:1471   CUCCAAUCCGUAUCAAUCCCCUUC   1494 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||||=| targets:1485   CUCCAAUCCGUAUCAAUCCCCUUC   1508 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||*|||||||||||||=| targets:1485   CUCCAAUCCGUAUCAAUCCCCUUC   1508 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   |||=||||*||||||||||||||| targets:1618   CUCUAAUCCGUAUCAAUCCCCUCC   1641 Target Full Sequence	1.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   =|=|||||*||||||||||||||| targets:687   UUUCAAUCCGUAUCAAUCCCCUCC   710 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   =|||||||*|||||||||||||=| targets:964   UUCCAAUCCGUAUCAAUCCCCUUC   987 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   GAGG-UUAGACAUAGUUAGGGGAGG   1   ||||-||||*||||||||||||||| targets:9   CUCCCAAUCCGUAUCAAUCCCCUCC   33 Target Full Sequence	1.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GAGG-UUAGACAUAGUUAGGGGAGG   1   ||||-||||*||||||||||||||| targets:1967   CUCCCAAUCCGUAUCAAUCCCCUCC   1991 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GAGG-UUAGACAUAGUUAGGGGAGG   1   ||||-||||*||||||||||||||| targets:1967   CUCCCAAUCCGUAUCAAUCCCCUCC   1991 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||**|||||||||||||| targets:886   CUCCAAUCCAUAUCAAUCCCCUCC   909 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||**|||||||||||||| targets:834   CUCCAAUCCAUAUCAAUCCCCUCC   857 Target Full Sequence	2.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||**|||||||||||||| targets:832   CUCCAAUCCAUAUCAAUCCCCUCC   855 Target Full Sequence	2.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||**|||||||||||||| targets:833   CUCCAAUCCAUAUCAAUCCCCUCC   856 Target Full Sequence	2.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   ||||||||**|||||||||||||| targets:905   CUCCAAUCCAUAUCAAUCCCCUCC   928 Target Full Sequence	2.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   GAGGUUAGACAUAGUUAGGGGAGG   1   |*||||||*|||||||||=||||| targets:996   CCCCAAUCCGUAUCAAUCUCCUCC   1019 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GAG-GUUAGACAUAGUUAGGGGAGG   1   |||-|||||**|||||||||||||| targets:432   CUCUCAAUCCAUAUCAAUCCCCUCC   456 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   GAGG---UUAGACAUAGUUAGGGGAGG   1   ||||---||||*|||||||||*||||| targets:873   CUCCCUCAAUCCGUAUCAAUCACCUCC   899 Target Full Sequence	2.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   GAGG---UUAGACAUAGUUAGGGGAGG   1   ||||---||||*|||||||||*||||| targets:873   CUCCCUCAAUCCGUAUCAAUCACCUCC   899 Target Full Sequence	2.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget