Search result

BaseInfo

ncRNA ID	novel_zma_miR2423
Species	Zea mays
Class	miRNA
Genome position	Chr4:28688957-28689019 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	40 - AAUUUUUGUGCAACUUCAUGAGGA - 63
Stem-loop(if miRNA)	--       ---    -A     AUGAGGAAGU   AAUUUUU   GUGC  ACUUC          A   |||||||   ||||  |||||          U   UUAAAAG   CACG  GUUUU          A CU       UAC    AA     UGUAACAAAA
Stem-loop sequence	AAUUUUUGUGCAACUUCAUGAGGAAGUAUAAAAACAAUGUUUUUGAAGCACCAUGAAAAUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008665420.1	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   |||||||||||||||||||||||| targets:289   UCCUCAUGAAGUUGCACAAAAAUU   312 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC103642103), mRNA	NA	coding protein	psRNATarget
XM_008665420.1	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   |||||||||||||||||||||||| targets:331   UCCUCAUGAAGUUGCACAAAAAUU   354 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC103642103), mRNA	NA	coding protein	psRNATarget
XM_008648200.2	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   **||||*||||||||||||||*|| targets:2132   CACUCAGGAAGUUGCACAAAAUUU   2155 Target Full Sequence	2.5	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008648199.2	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   **||||*||||||||||||||*|| targets:2134   CACUCAGGAAGUUGCACAAAAUUU   2157 Target Full Sequence	2.5	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008648198.2	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   **||||*||||||||||||||*|| targets:2133   CACUCAGGAAGUUGCACAAAAUUU   2156 Target Full Sequence	2.5	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648197.2	ncRNA:24   AGGAGUACUUCAACGUGUUUUUAA   1   **||||*||||||||||||||*|| targets:2134   CACUCAGGAAGUUGCACAAAAUUU   2157 Target Full Sequence	2.5	PREDICTED: Zea mays CLIP-associated protein (LOC103627891), transcript variant X1, mRNA	NA	coding protein	psRNATarget