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BaseInfo

ncRNA ID	novel_zma_miR2421
Species	Zea mays
Class	miRNA
Genome position	Chr8:26315820-26315872 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AUCUCACGGGAUUGAAACAGGGCC - 24
Stem-loop(if miRNA)	--     A                     AUCUC CGGGAUUGAAACAGGGCCU   ||||| ||||||||||||||||||U   UAGAG GCUCUAACUUUGUCCCGGA AA     C
Stem-loop sequence	AUCUCACGGGAUUGAAACAGGGCCUUAGGCCCUGUUUCAAUCUCGCGAGAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069923.1	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*|||||=|||||||| targets:1373   GGCCCUGUUCCAAUCUCGUGAGAU   1396 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0331J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659834.2	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*|||||=|||||||| targets:564   GGCCCUGUUCCAAUCUCGUGAGAU   587 Target Full Sequence	2.5	PREDICTED: Zea mays AT-hook motif nuclear-localized protein 13 (LOC100192715), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001349058.1	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*|||||=|||||||| targets:2677   GGCCCUGUUCCAAUCUCGUGAGAU   2700 Target Full Sequence	2.5	Zea mays ATP-dependent zinc metalloprotease FTSH 4 mitochondrial (LOC100384366), mRNA	NA	coding protein	psRNATarget
XM_008657098.2	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*|||||=|||||||| targets:2710   GGCCCUGUUCCAAUCUCGUGAGAU   2733 Target Full Sequence	2.5	PREDICTED: Zea mays ATP-dependent zinc metalloprotease FTSH 4 mitochondrial (LOC100384366), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ241927.1	ncRNA:23   CGGGACAAAGUUAGGGCACUCUA   1   |||||||||||||||||*||||| targets:1   GCCCUGUUUCAAUCCCGCGAGAU   23 Target Full Sequence	1.5	Sequence 7922 from Patent EP2985353	NA	coding protein	psRNATarget
HI409797.1	ncRNA:23   CGGGACAAAGUUAGGGCACUCUA   1   |||||||||||||||||*||||| targets:1   GCCCUGUUUCAAUCCCGCGAGAU   23 Target Full Sequence	1.5	Sequence 7922 from Patent EP2074227	NA	coding protein	psRNATarget
JB170258.1	ncRNA:23   CGGGACAAAGUUAGGGCACUCUA   1   |||||||||||||||||*||||| targets:1   GCCCUGUUUCAAUCCCGCGAGAU   23 Target Full Sequence	1.5	Sequence 7922 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001150587.1	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*||||||||*||||| targets:1139   GGCCCUGUUCCAAUCCCGCGAGAU   1162 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276884 (LOC100276884), mRNA	NA	coding protein	psRNATarget
EU965457.1	ncRNA:24   CCGGGACAAAGUUAGGGCACUCUA   1   |||||||||*||||||||*||||| targets:1139   GGCCCUGUUCCAAUCCCGCGAGAU   1162 Target Full Sequence	2.5	Zea mays clone 286162 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget