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BaseInfo

ncRNA ID	novel_zma_miR2417
Species	Zea mays
Class	miRNA
Genome position	Chr8:95056299-95056422 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089714;SRR2089698;SRR2089707
Length	24
Mature sequence(if miRNA)	101 - AAGGGUUGAUUUGGUGAUAAGGGG - 124
Stem-loop(if miRNA)	-AAG               AA          A      U   A                  A     GGUUGAUUUGGUGAU  GGGGAUCACG GAGGAU GAA GGGGUUGAGGGGGAAAUG A     |||||||||||||||  |||||||||| |||||| ||| ||||||||||||||||||     CCGACUAAACCACUG  UCCCUAGUGC CUCUUA CUU CCUUAACUCUCCCUUUAC C AAUA               -G          C      C   C                  U
Stem-loop sequence	AAGGGUUGAUUUGGUGAUAAGGGGAUCACGAGAGGAUUGAAAGGGGUUGAGGGGGAAAUGAACUCAUUUCCCUCUCAAUUCCCUUCCAUUCUCCCGUGAUCCCUGGUCACCAAAUCAGCCAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973567.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||||||=||||||||||||||||* targets:117   CCCCUUGUCACCAAAUCAACCCUG   140 Target Full Sequence	2.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||||||=||||||||||||||||* targets:303   CCCCUUGUCACCAAAUCAACCCUA   326 Target Full Sequence	2.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||||||=||||||||||||||||* targets:109   CCCCUUGUCACCAAAUCAACCCUA   132 Target Full Sequence	2.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||*||||||||||||||||||||* targets:1763   CCACUUAUCACCAAAUCAACCCUA   1786 Target Full Sequence	1.0	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||*||||||||||||||||||||* targets:1655   CCACUUAUCACCAAAUCAACCCUA   1678 Target Full Sequence	1.0	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||*||||||||||||||||||||* targets:1655   CCACUUAUCACCAAAUCAACCCUA   1678 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:5769   UCCCUUGUCACCAAAUGAACCCUU   5792 Target Full Sequence	2.5	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:4707   UCCCUUGUCACCAAAUGAACCCUU   4730 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:4706   UCCCUUGUCACCAAAUGAACCCUU   4729 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:3958   UCCCUUGUCACCAAAUGAACCCUU   3981 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:3919   UCCCUUGUCACCAAAUGAACCCUU   3942 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||||=|||||||||*||||||| targets:3806   UCCCUUGUCACCAAAUGAACCCUU   3829 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   ||*|||=|=||||||||||||||* targets:1599   CCACUUGUUACCAAAUCAACCCUA   1622 Target Full Sequence	3.0	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   GGGGAAUAGUGGUUUAGUUGGGAA   1   =|||**=||||||||||||||||| targets:2181   UCCCGGGUCACCAAAUCAACCCUU   2204 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget