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BaseInfo

ncRNA ID novel_zma_miR2415
Species Zea mays
Class miRNA
Genome position Chr1:12135342-12135423 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2089715
Length 24
Mature sequence(if miRNA) 1 - AGACUUGUGCUUUGGCGUGGGAUA - 24
Stem-loop(if miRNA) --   C   U     GG       UAAACGA GA      UUAAC
  AGA UUG GCUUU  CGUGGGA       G  GAUUUU     C
  ||| ||| |||||  |||||||       |  ||||||     A
  UCU AGC UGAGA  GCACCCU       C  UUAAAG     C
GA   A   -     -G       ------- AC      UCAGA
Stem-loop sequence AGACUUGUGCUUUGGCGUGGGAUAAACGAGGAGAUUUUUUAACCACAGACUGAAAUUCACUCCCACGGAGAGUCGAAUCUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU946382.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:350   UGUCCCACGCCAAAGCACAGGUCU   373

1.5 Zea mays clone 306224 mRNA sequence NA coding protein psRNATarget
EU944887.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:213   UGUCCCACGCCAAAGCACAGGUCU   236

1.5 Zea mays clone 234664 mRNA sequence NA coding protein psRNATarget
XM_020544916.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:940   UGUCCCACGCCAAAGCACAGGUCU   963

1.5 PREDICTED: Zea mays (DL)-glycerol-3-phosphatase 2 (LOC100217236), transcript variant X3, mRNA NA coding protein psRNATarget
BT069702.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:1031   UGUCCCACGCCAAAGCACAGGUCU   1054

1.5 Zea mays full-length cDNA clone ZM_BFb0215C01 mRNA, complete cds NA coding protein psRNATarget
EU969730.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:1027   UGUCCCACGCCAAAGCACAGGUCU   1050

1.5 Zea mays clone 334749 mRNA sequence NA coding protein psRNATarget
XM_008663292.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:1075   UGUCCCACGCCAAAGCACAGGUCU   1098

1.5 PREDICTED: Zea mays (DL)-glycerol-3-phosphatase 2 (LOC100217236), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544915.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:1203   UGUCCCACGCCAAAGCACAGGUCU   1226

1.5 PREDICTED: Zea mays (DL)-glycerol-3-phosphatase 2 (LOC100217236), transcript variant X1, mRNA NA coding protein psRNATarget
AY109397.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:2301   UGUCCCACGCCAAAGCACAGGUCU   2324

1.5 Zea mays CL2022_1 mRNA sequence NA coding protein psRNATarget
XM_020538556.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:588   UGUCCCACGCCAAAGCACAGGUCU   611

1.5 PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103627260), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538555.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:590   UGUCCCACGCCAAAGCACAGGUCU   613

1.5 PREDICTED: Zea mays Transducin/WD40 repeat-like superfamily protein (LOC103627260), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651034.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||||||||||||||=||||
targets:1092   UGUCCCACGCCAAAGCACAGGUCU   1115

1.5 PREDICTED: Zea mays vacuolar amino acid transporter 1 (LOC103629935), mRNA NA coding protein psRNATarget
BT061812.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1226   UGUCCCAUGCCAAAGCACAGGUCU   1249

2.5 Zea mays full-length cDNA clone ZM_BFb0185E06 mRNA, complete cds NA coding protein psRNATarget
BT061483.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1230   UGUCCCAUGCCAAAGCACAGGUCU   1253

2.5 Zea mays full-length cDNA clone ZM_BFb0151E20 mRNA, complete cds NA coding protein psRNATarget
XM_008663717.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1259   UGUCCCAUGCCAAAGCACAGGUCU   1282

2.5 PREDICTED: Zea mays hus1-like protein (LOC100282451), transcript variant X2, mRNA NA coding protein psRNATarget
BT042064.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1309   UGUCCCAUGCCAAAGCACAGGUCU   1332

2.5 Zea mays full-length cDNA clone ZM_BFb0124E18 mRNA, complete cds NA coding protein psRNATarget
NM_001155362.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1305   UGUCCCAUGCCAAAGCACAGGUCU   1328

2.5 Zea mays hus1-like protein (LOC100282451), mRNA NA coding protein psRNATarget
EU960949.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1309   UGUCCCAUGCCAAAGCACAGGUCU   1332

2.5 Zea mays clone 229820 hus1-like protein mRNA, complete cds NA coding protein psRNATarget
XM_008663716.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:1352   UGUCCCAUGCCAAAGCACAGGUCU   1375

2.5 PREDICTED: Zea mays hus1-like protein (LOC100282451), transcript variant X1, mRNA NA coding protein psRNATarget
BT061128.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=||||||||=||||||||=||||
targets:726   UGUCCCACGCUAAAGCACAGGUCU   749

2.5 Zea mays full-length cDNA clone ZM_BFb0112E06 mRNA, complete cds NA coding protein psRNATarget
NM_001165864.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=||||||||=||||||||=||||
targets:923   UGUCCCACGCUAAAGCACAGGUCU   946

2.5 Zea mays uncharacterized LOC100304430 (LOC100304430), mRNA NA coding protein psRNATarget
XM_020551657.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:2476   UGUCCCAUGCCAAAGCACAGGUCU   2499

2.5 PREDICTED: Zea mays uncharacterized LOC100382527 (LOC100382527), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020551656.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:2476   UGUCCCAUGCCAAAGCACAGGUCU   2499

2.5 PREDICTED: Zea mays uncharacterized LOC100382527 (LOC100382527), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020548157.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:4738   UGUCCCAUGCCAAAGCACAGGUCU   4761

2.5 PREDICTED: Zea mays GPCR-type G protein COLD1 (LOC103645985), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020548154.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:7328   UGUCCCAUGCCAAAGCACAGGUCU   7351

2.5 PREDICTED: Zea mays GPCR-type G protein COLD1 (LOC103645985), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548153.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  |=|||||=|||||||||||=||||
targets:7328   UGUCCCAUGCCAAAGCACAGGUCU   7351

2.5 PREDICTED: Zea mays GPCR-type G protein COLD1 (LOC103645985), transcript variant X1, mRNA NA coding protein psRNATarget
EZ066024.1
ncRNA:22   AGGGUGCGGUUUCGUGUUCAGA   1
  |||||||||||||||||=||||
targets:1   UCCCACGCCAAAGCACAGGUCU   22

1.5 TSA: Zea mays contig01658, mRNA sequence NA coding protein psRNATarget
BT034314.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  *=*|=||||||||||*|||||||*
targets:1105   AGGCUCACGCCAAAGGACAAGUCA   1128

2.5 Zea mays full-length cDNA clone ZM_BFc0009F09 mRNA, complete cds NA coding protein psRNATarget
BT054621.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  *=*|=||||||||||*|||||||*
targets:1142   AGGCUCACGCCAAAGGACAAGUCA   1165

2.5 Zea mays full-length cDNA clone ZM_BFc0115J23 mRNA, complete cds NA coding protein psRNATarget
NM_001137458.2
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  *=*|=||||||||||*|||||||*
targets:1159   AGGCUCACGCCAAAGGACAAGUCA   1182

2.5 Zea mays uncharacterized LOC100192035 (LOC100192035), mRNA NA coding protein psRNATarget
EU956785.1
ncRNA:24   AUAGGGUGCGGUUUCGUGUUCAGA   1
  *=*|=||||||||||*|||||||*
targets:1160   AGGCUCACGCCAAAGGACAAGUCA   1183

2.5 Zea mays clone 1573876 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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