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BaseInfo

ncRNA ID	novel_zma_miR2413
Species	Zea mays
Class	miRNA
Genome position	Chr8:131153063-131153124 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	39 - GGGAUUGAAGAGGAUUGAGGUGGA - 62
Stem-loop(if miRNA)	--          A      AG U      GA   GGGAUUGAAG GGAUUG  G GGAAAU  A   |||||||||| ||||||  | ||||||   CCCUAACUUU CUUAAC  C CCUUUA  C AG          C      CU U      AU
Stem-loop sequence	GGGAUUGAAGAGGAUUGAGGUGGAAAUGAACUAAUUUCCUCUCCAAUUCCUUUCAAUCCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942844.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |||||||||||||||||||||||| targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218 Target Full Sequence	0.0	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||||||||||||||||*||||||| targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	1.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*|||||||||||*|||||||||| targets:5050   UACACCUCAAUCCACUUCAAUCCC   5073 Target Full Sequence	1.5	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*|||=|||||||*|||||||||| targets:732   UACACUUCAAUCCACUUCAAUCCC   755 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
EU950098.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||=||||||||*|||||||||| targets:774   UACAUCUCAAUCCACUUCAAUCCC   797 Target Full Sequence	1.5	Zea mays clone 461257 mRNA sequence	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*|||=|||||||*|||||||||| targets:1080   UACACUUCAAUCCACUUCAAUCCC   1103 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   *=*=|||||||||||||||||||* targets:852   AUGGCCUCAAUCCUCUUCAAUCCA   875 Target Full Sequence	1.0	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   *=*=|||||||||||||||||||* targets:3480   AUGGCCUCAAUCCUCUUCAAUCCA   3503 Target Full Sequence	1.0	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
EU942361.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||==|||||||*|||||||||| targets:506   UACAUUUCAAUCCACUUCAAUCCC   529 Target Full Sequence	2.5	Zea mays clone 1487121 mRNA sequence	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||=||=|||||*|||||||||| targets:711   UACAUCUUAAUCCACUUCAAUCCC   734 Target Full Sequence	2.5	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
JB166589.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||=||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238258.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||=||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2985353	NA	coding protein	psRNATarget
HI406128.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   |*||=||||||||*|||||||||* targets:75   UACAUCUCAAUCCACUUCAAUCCG   98 Target Full Sequence	2.5	Sequence 4253 from Patent EP2074227	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||=*|||||||||*|||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||=*|||||||||*|||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||=*|||||||||*|||||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
EU947467.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||==|=*|||*||||||||||||| targets:1290   UCUGCUCCAAACCUCUUCAAUCCC   1313 Target Full Sequence	3.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   ||==|=*|||*||||||||||||| targets:1993   UCUGCUCCAAACCUCUUCAAUCCC   2016 Target Full Sequence	3.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   *||*|||||||||||*|||||||* targets:75   ACCCCCUCAAUCCUCCUCAAUCCA   98 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   *||*|||||||||||*|||||||* targets:75   ACCCCCUCAAUCCUCCUCAAUCCA   98 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   AGGUGGAGUUAGGAGAAGUUAGGG   1   *||*|||||||||||*|||||||* targets:75   ACCCCCUCAAUCCUCCUCAAUCCA   98 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget