Search result

BaseInfo

ncRNA ID novel_zma_miR2410
Species Zea mays
Class miRNA
Genome position Chr8:145512418-145512536 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - AAUAGAAUAAAAUCUAGGGACUAA - 24
Stem-loop(if miRNA) --       UC         CU       GUAU      C                   
  AGUCCCU  AUUUUAUUC  UUUUAGU    AAAUUG UAAAUAUAGAAACUAAAAUA
  |||||||  |||||||||  |||||||    |||||| |||||||||||||||||||A
  UCAGGGA  UAAAAUAAG  AAAAUCA    UUUAAC GUUUAUAUCUUUGAUUUUGA
AA       UC         AU       AGGU      A                   
Stem-loop sequence AGUCCCUUCAUUUUAUUCCUUUUUAGUGUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGACAAUUUUGGAACUAAAAUAGAAUAAAAUCUAGGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001112512.2
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*|||||||||||||
targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592

1.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689

2.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008667360.2
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*|||||||||||||
targets:1066   UUAGUCCCUAUAUUUUAUUCUAUU   1089

1.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
EZ052166.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||||||||||||*|||
targets:777   UUAGUCCCUAGAUUUUAUUCCAUU   800

1.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EZ060524.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*|||||||||||||
targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92

1.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
LQ235125.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*||||||||=||||
targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52

2.5 Sequence 1120 from Patent EP2985353 NA coding protein psRNATarget
JB163456.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*||||||||=||||
targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52

2.5 Sequence 1120 from Patent EP2559767 NA coding protein psRNATarget
HI402995.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*||||||||=||||
targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52

2.5 Sequence 1120 from Patent EP2074227 NA coding protein psRNATarget
EU956677.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  *|||||||||*||||||||=||||
targets:2037   CUAGUCCCUACAUUUUAUUUUAUU   2060

2.5 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||||*|||||||||*|||
targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859

2.0 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235185.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
HI403055.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
HI403050.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
JB163511.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  |||||||||**|||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50

2.0 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||***|||||||||||||
targets:1566   UUAGUCCCAUCAUUUUAUUCUAUU   1589

3.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||***|||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

3.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||***|||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

3.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
JB163501.1
ncRNA:24   AAUCAGGGAUCUAAAAUAAGAUAA   1
  ||||||||***|||||||||||||
targets:29   UUAGUCCCAUCAUUUUAUUCUAUU   52

3.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.