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BaseInfo

ncRNA ID	novel_zma_miR2406
Species	Zea mays
Class	miRNA
Genome position	Chr8:153105487-153105618 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	109 - AGGACAUGUUUGGUUCGUGGCUAA - 132
Stem-loop(if miRNA)	--   A           - G  G     UAC               -------------        CG   A   AGG CAUGUUUGGUU C UG CUAAC   GCCACACUUUGCCUA             AGGUUAGU  UUC A   ||| ||||||||||| | || |||||   |||||||||||||||             ||||||||  ||| A   UCC GUACAAACCAA G AC GAUUG   CGGUGUGAAACGGAU             UCCAAUCA  AAG U AU   C           G G  G     -CA               UAAAAAGACGGAU        AG   U
Stem-loop sequence	AGGACAUGUUUGGUUCGUGGCUAACUACGCCACACUUUGCCUAAGGUUAGUCGUUCAAAUUGAAGAACUAACCUUAGGCAGAAAAAUUAGGCAAAGUGUGGCACGUUAGGCAGGGAACCAAACAUGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163747.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACAGGA   1   ||||||||||||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACAGGA   1   ||||||||||||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACAGGA   1   ||||||||||||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACAGGA   1   ||||||||*|||||||||||*||| targets:887   UUAGCCACAAACCAAACAUGCCCU   910 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ086875.1	ncRNA:24   AAUCGGU-GCUUGGUUUGUACAGGA   1   ||||=||-|*||||||||||||||| targets:11   UUAGUCAUCAAACCAAACAUGUCCU   35 Target Full Sequence	3.0	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   AAUCGGU-GCUUGGUUUGUACAGGA   1   ||||=||-|*||||||||||||||| targets:40   UUAGUCAUCAAACCAAACAUGUCCU   64 Target Full Sequence	3.0	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
XM_008649755.2	ncRNA:24   AAU-CGGUGCUUGGUUUGUACAGGA   1   |||-||*==|||||||||||||||| targets:1289   UUAAGCAGUGAACCAAACAUGUCCU   1313 Target Full Sequence	3.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539029.1	ncRNA:24   AAU-CGGUGCUUGGUUUGUACAGGA   1   |||-||*==|||||||||||||||| targets:1406   UUAAGCAGUGAACCAAACAUGUCCU   1430 Target Full Sequence	3.0	PREDICTED: Zea mays alpha/beta-Hydrolases superfamily protein (cl16339_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ072721.1	ncRNA:24   AAU--CGGUGCUUGGUUUGUACAGGA   1   ||=--|=*||||||||||||||*||| targets:20   UUGAGGUAACGAACCAAACAUGCCCU   45 Target Full Sequence	2.5	TSA: Zea mays contig08358, mRNA sequence	NA	coding protein	psRNATarget
XM_008665828.1	ncRNA:24   AAUCGGUGCUUGGUUUGUACAGGA   1   **||*|||||||||||||||*||* targets:112   GCAGGCACGAACCAAACAUGCCCG   135 Target Full Sequence	2.5	PREDICTED: Zea mays formin-like protein 13 (LOC103642590), mRNA	NA	coding protein	psRNATarget