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BaseInfo

ncRNA ID	novel_zma_miR2400
Species	Zea mays
Class	miRNA
Genome position	Chr8:179755078-179755129 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089715;SRR2287159;SRR5451005;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - UGCUCUCUGCACAGGGGCGGACGA - 24
Stem-loop(if miRNA)	--      GG   G    -    -   G   GUCCGC  CCU GUGC GAGA CGC G   ||||||  ||| |||| |||| |||   CAGGCG  GGG CACG CUCU GUG C AG      --   A    U    C   G
Stem-loop sequence	GUCCGCGGCCUGGUGCGAGACGCGGCGGUGCUCUCUGCACAGGGGCGGACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ067064.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||||||||||||||=||| targets:37   CCGUCCGCCCCUGUGCAGAGGGCA   60 Target Full Sequence	1.5	TSA: Zea mays contig02698, mRNA sequence	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||||||||||||||=||| targets:1349   CCGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||||||||||||||=||| targets:1349   CCGUCCGCCCCUGUGCAGAGGGCA   1372 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
EU948904.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *||||||||||||||*|||||||| targets:529   CCGUCCGCCCCUGUGAAGAGAGCA   552 Target Full Sequence	1.5	Zea mays clone 389441 mRNA sequence	NA	coding protein	psRNATarget
EU949034.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *||||||||||||||*|||||||| targets:530   CCGUCCGCCCCUGUGAAGAGAGCA   553 Target Full Sequence	1.5	Zea mays clone 394358 mRNA sequence	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||*||||||||||||*|| targets:49   CCGUCCGCGCCUGUGCAGAGAUCA   72 Target Full Sequence	2.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||*||||||||||||*|| targets:49   CCGUCCGCGCCUGUGCAGAGAUCA   72 Target Full Sequence	2.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   AGCAGGCGGGGACACGUCUCUCGU   1   *|||||||*||||||||||||*|| targets:49   CCGUCCGCGCCUGUGCAGAGAUCA   72 Target Full Sequence	2.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget