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BaseInfo

ncRNA ID	osa-miR5081
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:16888-17137 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - UAAUUUGUAGCAAAUUGAUAGU - 32
Stem-loop(if miRNA)	A      -C                    C      G        C      C                A  A      C       C                   A     UG  ---AAU   A  UAGUGA  AAACUAUCAGUUUGUUGCAA AUUAGU AUCUAUUU AGUUUG UGCAAUAAUAGCGUGG AA UUAUCA AAAACUG AACUUUUACGUGAUAUGCU CUACA  AC      UGU G  ||||||  |||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||| || |||||| ||||||| ||||||||||||||||||| |||||  ||      |||  AUCACU  UUUGAUAGUUAAACGAUGUU UAAUCA UAGAUAAA UCAAAC ACGUUGUUAUCGUACC UU AAUAGU UUUUGAC UUGAAAAUGCACUAUACGA GAUGU  UG      ACG C -      AU                    -      A        A      A                C  C      A       A                   C     CA  CACUAU   A
Stem-loop sequence	AUAGUGACAAACUAUCAGUUUGUUGCAACAUUAGUGAUCUAUUUCAGUUUGCUGCAAUAAUAGCGUGGAAAAUUAUCACAAAACUGCAACUUUUACGUGAUAUGCUACUACAUGACAAUUGUAGCAGCAUAUCACGUACUGUAGCAGCAUAUCACGUAAAAGUUACAGUUUUAUGAUAACUUCCCAUGCUAUUGUUGCAACAAACUAAAAUAGAUAACUAAUUUGUAGCAAAUUGAUAGUUUUAUCACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015767187.1	ncRNA:22   UGAUAGUUAAACGAUGUU-UAAU   1   ||||||||||||||||||-|||| targets:560   ACUAUCAAUUUGCUACAACAUUA   582 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767189.1	ncRNA:22   UGAUAGUUAAACGAUGUU-UAAU   1   ||||||||||||||||||-|||| targets:560   ACUAUCAAUUUGCUACAACAUUA   582 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X5, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767188.1	ncRNA:22   UGAUAGUUAAACGAUGUU-UAAU   1   ||||||||||||||||||-|||| targets:560   ACUAUCAAUUUGCUACAACAUUA   582 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015773812.1	ncRNA:22   UGAUAGUUAAACGAUGUUUAAU   1   *=|||=||||||||=||||||| targets:824   UUUAUUAAUUUGCUGCAAAUUA   845 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cell number regulator 10 (LOC4334663), mRNA	cell number regulator 10(LOC4334663)	coding protein	psRNATarget

Reference

1	PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads"; Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U; BMC Genomics. 12:129(2011).