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BaseInfo

ncRNA ID	novel_zma_miR2388
Species	Zea mays
Class	miRNA
Genome position	Chr8:117593442-117593492 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR5451003
Length	22
Mature sequence(if miRNA)	1 - UGGAGGAGGCAUCUGCUCAGCU - 22
Stem-loop(if miRNA)	--        GCAUC     ----        UGGAGGAG     UGCUC    AGCUGC   ||||||||     |||||    |||||A   ACUUCCUC     ACGAG    UCGACU CU        ----A     GAUU
Stem-loop sequence	UGGAGGAGGCAUCUGCUCAGCUGCAUCAGCUUUAGGAGCAACUCCUUCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169257.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   |||||||||||||=|||||||* targets:291   AGCUGAGCAGAUGUCUCCUCCU   312 Target Full Sequence	2.5	Sequence 6921 from Patent EP2559767	NA	coding protein	psRNATarget
HI408796.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   |||||||||||||=|||||||* targets:291   AGCUGAGCAGAUGUCUCCUCCU   312 Target Full Sequence	2.5	Sequence 6921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240926.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   |||||||||||||=|||||||* targets:291   AGCUGAGCAGAUGUCUCCUCCU   312 Target Full Sequence	2.5	Sequence 6921 from Patent EP2985353	NA	coding protein	psRNATarget
KX538963.1	ncRNA:22   UCGACU-CGUCUACGGAGGAGGU   1   ||||||-||*||||||||||||| targets:156   AGCUGAUGCUGAUGCCUCCUCCA   178 Target Full Sequence	3.0	Zea mays ABI3 mRNA, complete cds	NA	coding protein	psRNATarget
EU971515.1	ncRNA:22   UCGACU-CGUCUACGGAGGAGGU   1   ||||||-||*||||||||||||| targets:284   AGCUGAUGCUGAUGCCUCCUCCA   306 Target Full Sequence	3.0	Zea mays clone 366455 mRNA sequence	NA	coding protein	psRNATarget
XM_020539753.1	ncRNA:22   UCGACU-CGUCUACGGAGGAGGU   1   ||||||-||*||||||||||||| targets:564   AGCUGAUGCUGAUGCCUCCUCCA   586 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539752.1	ncRNA:22   UCGACU-CGUCUACGGAGGAGGU   1   ||||||-||*||||||||||||| targets:560   AGCUGAUGCUGAUGCCUCCUCCA   582 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539751.1	ncRNA:22   UCGACU-CGUCUACGGAGGAGGU   1   ||||||-||*||||||||||||| targets:561   AGCUGAUGCUGAUGCCUCCUCCA   583 Target Full Sequence	3.0	PREDICTED: Zea mays B3 domain-containing protein IDEF1 (LOC103628923), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ097766.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   **|||||*||=||||||||||| targets:33   UCCUGAGGAGGUGCCUCCUCCA   54 Target Full Sequence	2.5	TSA: Zea mays contig33421, mRNA sequence	NA	coding protein	psRNATarget
KJ727889.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   ||**||||||=||||||||||| targets:420   AGACGAGCAGGUGCCUCCUCCA   441 Target Full Sequence	2.5	Zea mays clone pUT5982 orphans transcription factor (Orphan194) mRNA, partial cds	NA	coding protein	psRNATarget
XM_008659891.2	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   ||**||||||=||||||||||| targets:524   AGACGAGCAGGUGCCUCCUCCA   545 Target Full Sequence	2.5	PREDICTED: Zea mays CCT motif family protein (Orphan194), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138651.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   ||**||||||=||||||||||| targets:502   AGACGAGCAGGUGCCUCCUCCA   523 Target Full Sequence	2.5	Zea mays CCT motif family protein (LOC100193540), mRNA	NA	coding protein	psRNATarget
BT035822.1	ncRNA:22   UCGACUCGUCUACGGAGGAGGU   1   ||**||||||=||||||||||| targets:502   AGACGAGCAGGUGCCUCCUCCA   523 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0085B20 mRNA, complete cds	NA	coding protein	psRNATarget