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BaseInfo

ncRNA ID	novel_zma_miR2379
Species	Zea mays
Class	miRNA
Genome position	Chr7:19138769-19138828 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	37 - UGUGGUAUCGAUUACGGUUAGACU - 60
Stem-loop(if miRNA)	U    --U      U   G     C   AAC  GUGG   AUCGAU ACG UUAGA UUA   A  ||||   |||||| ||| ||||| |||  UACC   UGGUUA UGC AAUUU AGU   A U    CUU      U   -     -   ACA
Stem-loop sequence	UGUGGUAUCGAUUACGGUUAGACUUAAACAAACAUGAUUUAACGUUAUUGGUUUCCCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108955.1	ncRNA:24   UCAGAUUGGCAUUAGC-UAUGGUGU   1   ||||||||||||||||-|||||||| targets:978   AGUCUAACCGUAAUCGGAUACCACA   1002 Target Full Sequence	3.0	Zea mays PCO083425 mRNA sequence	NA	coding protein	psRNATarget
BT033521.1	ncRNA:24   UCAGAUUGGCAUUAGC-UAUGGUGU   1   ||||||||||||||||-|||||||| targets:1917   AGUCUAACCGUAAUCGGAUACCACA   1941 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0126H17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136867.1	ncRNA:24   UCAGAUUGGCAUUAGC-UAUGGUGU   1   ||||||||||||||||-|||||||| targets:1917   AGUCUAACCGUAAUCGGAUACCACA   1941 Target Full Sequence	3.0	Zea mays Senescence/dehydration-associated protein-related (LOC100191434), mRNA	NA	coding protein	psRNATarget
EU963612.1	ncRNA:24   UCAGAUUGGCAUUAGCUAUGGUGU   1   |||=*||||||||||||||||||| targets:1232   AGUUCAACCGUAAUCGAUACCACA   1255 Target Full Sequence	0.0	Zea mays clone 264680 FAD binding protein mRNA, complete cds	NA	coding protein	psRNATarget
BT019257.1	ncRNA:24   UCAGAUUGGCAUUAGCUAUGGUGU   1   ||||*||=|||||||||||||||| targets:1063   AGUCCAAUCGUAAUCGAUACCACA   1086 Target Full Sequence	1.0	Zea mays clone Contig930.F mRNA sequence	NA	coding protein	psRNATarget
EZ051806.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:209   AGUCCAACCGUAAUCAGAUACCACA   233 Target Full Sequence	3.0	TSA: Zea mays contig52926, mRNA sequence	NA	coding protein	psRNATarget
BT019235.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:205   AGUCCAACCGUAAUCAGAUACCACA   229 Target Full Sequence	3.0	Zea mays clone Contig908.F mRNA sequence	NA	coding protein	psRNATarget
XM_008656774.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:975   AGUCCAACCGUAAUCAGAUACCACA   999 Target Full Sequence	3.0	PREDICTED: Zea mays beta-hydroxyacyl-ACP dehydratase (LOC100283232), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063743.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:945   AGUCCAACCGUAAUCAGAUACCACA   969 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0102O24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669031.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1204   AGUCCAACCGUAAUCAGAUACCACA   1228 Target Full Sequence	3.0	PREDICTED: Zea mays Protein TONNEAU 1b (LOC100193953), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669030.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1221   AGUCCAACCGUAAUCAGAUACCACA   1245 Target Full Sequence	3.0	PREDICTED: Zea mays Protein TONNEAU 1b (LOC100193953), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143255.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1241   AGUCCAACCGUAAUCAGAUACCACA   1265 Target Full Sequence	3.0	Zea mays Cobalamin biosynthesis CobW-like protein (AY110439), mRNA	NA	coding protein	psRNATarget
BT037472.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1241   AGUCCAACCGUAAUCAGAUACCACA   1265 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0170N07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540336.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1312   AGUCCAACCGUAAUCAGAUACCACA   1336 Target Full Sequence	3.0	PREDICTED: Zea mays Cobalamin biosynthesis CobW-like protein (AY110439), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008652762.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1396   AGUCCAACCGUAAUCAGAUACCACA   1420 Target Full Sequence	3.0	PREDICTED: Zea mays Cobalamin biosynthesis CobW-like protein (AY110439), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020540334.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1431   AGUCCAACCGUAAUCAGAUACCACA   1455 Target Full Sequence	3.0	PREDICTED: Zea mays Cobalamin biosynthesis CobW-like protein (AY110439), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085887.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1472   AGUCCAACCGUAAUCAGAUACCACA   1496 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0076I18 mRNA, complete cds	NA	coding protein	psRNATarget
AY110439.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:1369   AGUCCAACCGUAAUCAGAUACCACA   1393 Target Full Sequence	3.0	Zea mays CL194_1 mRNA sequence	NA	coding protein	psRNATarget
BT055676.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:2316   AGUCCAACCGUAAUCAGAUACCACA   2340 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0101E03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154302.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:2332   AGUCCAACCGUAAUCAGAUACCACA   2356 Target Full Sequence	3.0	Zea mays PCO063726_ov (IDP142), mRNA	NA	coding protein	psRNATarget
EU956566.1	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:2333   AGUCCAACCGUAAUCAGAUACCACA   2357 Target Full Sequence	3.0	Zea mays clone 1566749 SLT1 protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676395.2	ncRNA:24   UCAGAUUGGCAUUAG-CUAUGGUGU   1   ||||*||||||||||-||||||||| targets:2522   AGUCCAACCGUAAUCAGAUACCACA   2546 Target Full Sequence	3.0	PREDICTED: Zea mays PCO063726_ov (IDP142), transcript variant X1, mRNA	NA	coding protein	psRNATarget