ncRNA ID | osa-miR166b-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:30327084-30327289 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 165 - GGAAUGUUGUCUGGCUCGGGG - 185 |
Stem-loop(if miRNA) |
           CAU    A        UU      CU     -    UUUUA    -     -      -   --     CU     --C    UCCUAGCUU    U GGGAGCCUUUU   UUUG GGGGAAUG  GUCUGG  CGGGG CUAC     AUUU CUCUC UCUUUU GAU  AUCUU  UUUCU   GAUC         GAUC U |||||||||||   |||| ||||||||  ||||||  ||||| ||||     |||| ||||| |||||| |||  |||||  |||||   ||||         |||| CCCUCGGGAAG   AAAC CCCCUUAC  CGGACC  GCUCU GAUG     UAGA GAGAG AGAGAA CUG  UAGAA  AAAGA   CUAG         CUAG U            -AC    C        UU      AG     A    -UCUG    U     U      A   AC     --     AUU    CUAAACUCU    U |
Stem-loop sequence | GGGAGCCUUUUCAUUUUGAGGGGAAUGUUGUCUGGCUCGGGGCUACUUUUAAUUUCUCUCUCUUUUGAUAUCUUCUUUUCUCGAUCUCCUAGCUUGAUCUUUUGAUCUCUCAAAUCGAUCUUAAGAAAAAGAUCAGUCAAAGAGAUGAGAGUAGAUGUCUGUAGAUCUCGGACCAGGCUUCAUUCCCCCCAAACAGAAGGGCUCCC |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |