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BaseInfo

ncRNA ID osa-miR166b-5p
Species Oryza sativa
Class miRNA
Genome position Chr6:30327084-30327289 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 165 - GGAAUGUUGUCUGGCUCGGGG - 185
Stem-loop(if miRNA)            CAU    A        UU      CU     -    UUUUA    -     -      -   --     CU     --C    UCCUAGCUU    U
GGGAGCCUUUU   UUUG GGGGAAUG  GUCUGG  CGGGG CUAC     AUUU CUCUC UCUUUU GAU  AUCUU  UUUCU   GAUC         GAUC U
|||||||||||   |||| ||||||||  ||||||  ||||| ||||     |||| ||||| |||||| |||  |||||  |||||   ||||         ||||
CCCUCGGGAAG   AAAC CCCCUUAC  CGGACC  GCUCU GAUG     UAGA GAGAG AGAGAA CUG  UAGAA  AAAGA   CUAG         CUAG U
           -AC    C        UU      AG     A    -UCUG    U     U      A   AC     --     AUU    CUAAACUCU    U
Stem-loop sequence GGGAGCCUUUUCAUUUUGAGGGGAAUGUUGUCUGGCUCGGGGCUACUUUUAAUUUCUCUCUCUUUUGAUAUCUUCUUUUCUCGAUCUCCUAGCUUGAUCUUUUGAUCUCUCAAAUCGAUCUUAAGAAAAAGAUCAGUCAAAGAGAUGAGAGUAGAUGUCUGUAGAUCUCGGACCAGGCUUCAUUCCCCCCAAACAGAAGGGCUCCC

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).