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BaseInfo

ncRNA ID novel_zma_miR2369
Species Zea mays
Class miRNA
Genome position Chr4:110784501-110784595 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR2638137;SRR2647221;SRR2647388
Length 24
Mature sequence(if miRNA) 72 - UUAUUCUAUUUUAGUACUUAAAAU - 95
Stem-loop(if miRNA) --               A    A A  C                  C
  UUAUUCUAUUUUAGU CUUA A UG UAAAUAUGGAAACUAAGA U
  ||||||||||||||| |||| | || |||||||||||||||||| C
  AAUAAGGUAAAAUCA GAAU U AC GUUUAUGCCUUUGAUUUU U
AA               A    A A  A                  A
Stem-loop sequence UUAUUCUAUUUUAGUACUUAAAAUGCUAAAUAUGGAAACUAAGACUCUAUUUUAGUUUCCGUAUUUGACAAUAUAAGAACUAAAAUGGAAUAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403052.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  ||||||||||||||||||||||||
targets:110   AUUUUAAGUACUAAAAUAGAAUAA   133

0.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
JB163513.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  ||||||||||||||||||||||||
targets:110   AUUUUAAGUACUAAAAUAGAAUAA   133

0.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  ||||||||||||||||||||||||
targets:110   AUUUUAAGUACUAAAAUAGAAUAA   133

0.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB167393.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*|||||||=||||||||||||||
targets:74   AAUUUAAGUGCUAAAAUAGAAUAA   97

1.0 Sequence 5057 from Patent EP2559767 NA coding protein psRNATarget
LQ239062.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*|||||||=||||||||||||||
targets:74   AAUUUAAGUGCUAAAAUAGAAUAA   97

1.0 Sequence 5057 from Patent EP2985353 NA coding protein psRNATarget
HI406932.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*|||||||=||||||||||||||
targets:74   AAUUUAAGUGCUAAAAUAGAAUAA   97

1.0 Sequence 5057 from Patent EP2074227 NA coding protein psRNATarget
HI408748.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=||||||||||=||||||
targets:84   AAUUUAGGUACUAAAAUGGAAUAA   107

2.5 Sequence 6873 from Patent EP2074227 NA coding protein psRNATarget
LQ240878.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=||||||||||=||||||
targets:84   AAUUUAGGUACUAAAAUGGAAUAA   107

2.5 Sequence 6873 from Patent EP2985353 NA coding protein psRNATarget
JB169209.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=||||||||||=||||||
targets:84   AAUUUAGGUACUAAAAUGGAAUAA   107

2.5 Sequence 6873 from Patent EP2559767 NA coding protein psRNATarget
AY105460.1
ncRNA:24   UAAAAUUC-AUGAUUUUAUCUUAUU   1
  *||||||*-||||||||||||||||
targets:28   UUUUUAAAAUACUAAAAUAGAAUAA   52

3.0 Zea mays PCO107885 mRNA sequence NA coding protein psRNATarget
HI402994.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=|*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUAA   133

2.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=|*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUAA   133

2.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=|*|||||||||||||||
targets:110   AAUUUAGGGACUAAAAUAGAAUAA   133

2.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
XM_020547054.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||||*|||||||||*|||||
targets:386   AAUUUAAGGACUAAAAUAAAAUAA   409

2.5 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547055.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||||*|||||||||*|||||
targets:384   AAUUUAAGGACUAAAAUAAAAUAA   407

2.5 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA NA coding protein psRNATarget
LQ235578.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||*|*|||||||||||||||
targets:76   AAUUUAUGAACUAAAAUAGAAUAA   99

2.0 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
HI403448.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||*|*|||||||||||||||
targets:76   AAUUUAUGAACUAAAAUAGAAUAA   99

2.0 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
JB163909.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||*|*|||||||||||||||
targets:76   AAUUUAUGAACUAAAAUAGAAUAA   99

2.0 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
JB163770.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
LQ235549.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
LQ235439.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
HI403309.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
JB163880.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
HI403419.1
ncRNA:24   UAAAAUUCAUGAUUUUAUCUUAUU   1
  |*||||=**|||||||||||||||
targets:76   AAUUUAGAAACUAAAAUAGAAUAA   99

3.0 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
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