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BaseInfo

ncRNA ID	novel_zma_miR2363
Species	Zea mays
Class	miRNA
Genome position	Chr7:173381951-173382047 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR5451003;SRR5451004;SRR5451005
Length	24
Mature sequence(if miRNA)	74 - AAGAGUAAUGGAGGGGAUUGAGGG - 97
Stem-loop(if miRNA)	--                   G     -  AG   CC    C      A   AAGAGUAAUGGAGGGGAUU AGGGG CU  AAU  CUCG UAUUCA A   ||||||||||||||||||| ||||| ||  |||  |||| ||||||   UUCUCAUUAUCUCCCCUAA UCCCC GA  UUA  GAGU AUAAGU A CG                   A     U  CU   UA    A      U
Stem-loop sequence	AAGAGUAAUGGAGGGGAUUGAGGGGCUAGAAUCCCUCGCUAUUCAAAAUUGAAUAAUGAGAUAUUUCAGUCCCCUAAAUCCCCUCUAUUACUCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654031.2	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   |||||||||||||||||||||||| targets:1677   CCCUCAAUCCCCUCCAUUACUCUU   1700 Target Full Sequence	0.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:91   CCUUCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	1.0	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:91   CCUUCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	1.0	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:91   CCUUCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	1.0	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:1044   CCUUCAAUCCUCUCCAUUACUCUU   1067 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:877   CCUUCAAUCCUCUCCAUUACUCUU   900 Target Full Sequence	1.0	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=|||||||=||||||||||||| targets:877   CCUUCAAUCCUCUCCAUUACUCUU   900 Target Full Sequence	1.0	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   |||||||||*|||||||||||||| targets:647   CCCUCAAUCACCUCCAUUACUCUU   670 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT062774.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=||||||*|||||||||||||| targets:206   CCUUCAAUCACCUCCAUUACUCUU   229 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0344J23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542853.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=||||||*|||||||||||||| targets:1546   CCUUCAAUCACCUCCAUUACUCUU   1569 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542855.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ||=||||||*|||||||||||||| targets:1549   CCUUCAAUCACCUCCAUUACUCUU   1572 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   |==|||||||||||||*||||||| targets:1330   CUUUCAAUCCCCUCCAAUACUCUU   1353 Target Full Sequence	1.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   *==|=||||=||||||*||||||| targets:186   GUUUUAAUCUCCUCCAAUACUCUU   209 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   GGGAGUUAGGGGAGGUAAUGAGAA   1   ==*|=||||=||||||*||||||| targets:176   UUAUUAAUCUCCUCCAAUACUCUU   199 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget