Search result

BaseInfo

ncRNA ID novel_zma_miR2357
Species Zea mays
Class miRNA
Genome position Chr1:275176767-275176903 [-]
Reference genome RefGen_v4
Source SRR1583941
Length 24
Mature sequence(if miRNA) 114 - AAUCUGGUGCAUCCAUUUCGCAUC - 137
Stem-loop(if miRNA) --            C     C C  C        G  -              C             UCC
  AAUCUGGUGCAU CAUUU G AU UAACAGCA CA CUAAUUUUGUGAAG ACCCCUUCCACCU   U
  |||||||||||| ||||| | || |||||||| || |||||||||||||| |||||||||||||
  UUAGACCACGUA GUAGA C UA GUUGUCGU GU GAUUAAAAUGCUUC UGGGGAGGGUGGG   C
AU            A     A A  A        G  C              U             CCC
Stem-loop sequence AAUCUGGUGCAUCCAUUUCGCAUCUAACAGCAGCACUAAUUUUGUGAAGCACCCCUUCCACCUUCCUCCCCGGGUGGGAGGGGUUCUUCGUAAAAUUAGCUGGUGCUGUUGAAUACAAGAUGAAUGCACCAGAUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645476.2
ncRNA:24   CUACGCUUUACCUACGUGGUCUAA   1
  ||||=||||||*||||||||||||
targets:888   GAUGUGAAAUGAAUGCACCAGAUU   911

1.5 PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551532.1
ncRNA:24   CUACGCUUUACCUACGUGGUCUAA   1
  *|||*||||||*||||||||||||
targets:764   AAUGAGAAAUGAAUGCACCAGAUU   787

1.5 PREDICTED: Zea mays uncharacterized LOC100282291 (pco125364), transcript variant X1, mRNA NA coding protein psRNATarget