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BaseInfo

ncRNA ID	novel_zma_miR2352
Species	Zea mays
Class	miRNA
Genome position	Chr6:76753945-76754089 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR2089700
Length	21
Mature sequence(if miRNA)	1 - UAAGGGUUUGUUCGGUUAUUU - 21
Stem-loop(if miRNA)	--UA               -AU UU                GA         UACGGAUUGGA    A      -   A     AGGGUUUGUUCGGUU   U  CAAUCCAUAUGGAUUG  GGGGAUUGA           GGGG UUUUGA CUU C     |||||||||||||||   |  ||||||||||||||||  |||||||||           |||| |||||| |||     UCCCGAACAAGCCAA   G  GUUAGGUAUACCUAAC  CCCCUAACU           CCCC AAAAUU GGG U GAAA               GAU GG                UC         -----------    C      A   A
Stem-loop sequence	UAAGGGUUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUAAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGCCCUAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654469.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ||||||||||||||=|||||| targets:3148   AAAUAACCGAACAAGCCCUUA   3168 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ||||||||||||||=|||||| targets:1004   AAAUAACCGAACAAGCCCUUA   1024 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ||||||||||||||=|||||| targets:812   AAAUAACCGAACAAGCCCUUA   832 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:308   GAAUAACCGAACAAGCCCUUA   328 Target Full Sequence	1.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2672   GAAUAACCGAACAAGCCCUUA   2692 Target Full Sequence	1.5	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2889   GAAUAACCGAACAAGCCCUUA   2909 Target Full Sequence	1.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2880   GAAUAACCGAACAAGCCCUUA   2900 Target Full Sequence	1.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2563   GAAUAACCGAACAAGCCCUUA   2583 Target Full Sequence	1.5	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2528   GAAUAACCGAACAAGCCCUUA   2548 Target Full Sequence	1.5	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:2583   GAAUAACCGAACAAGCCCUUA   2603 Target Full Sequence	1.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
BT087335.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||=||||||||||||| targets:695   GAAUAACUGAACAAACCCUUA   715 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0043P09 mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:1544   GAAUAACCGAACAAGCCCUUA   1564 Target Full Sequence	1.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:1550   GAAUAACCGAACAAGCCCUUA   1570 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
BT066364.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:1550   GAAUAACCGAACAAGCCCUUA   1570 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:1320   GAAUAACCGAACAAGCCCUUA   1340 Target Full Sequence	1.5	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
BT062563.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:1320   GAAUAACCGAACAAGCCCUUA   1340 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
BT018247.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:489   GAAUAACCGAACAAGCCCUUA   509 Target Full Sequence	1.5	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ||||||||||||||=|||||= targets:473   AAAUAACCGAACAAGCCCUUG   493 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
HI409644.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:126   GAAUAACCGAACAAGCCCUUA   146 Target Full Sequence	1.5	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
JB170105.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:126   GAAUAACCGAACAAGCCCUUA   146 Target Full Sequence	1.5	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241774.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =|||||||||||||=|||||| targets:126   GAAUAACCGAACAAGCCCUUA   146 Target Full Sequence	1.5	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   *|||||||||||||=|||||| targets:2390   CAAUAACCGAACAAGCCCUUA   2410 Target Full Sequence	1.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   *|||||||||||||=|||||| targets:1278   CAAUAACCGAACAAGCCCUUA   1298 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   *|||||||||||||=|||||| targets:1278   CAAUAACCGAACAAGCCCUUA   1298 Target Full Sequence	1.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
EU941886.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   *|||||||||||||=|||||| targets:180   CAAUAACCGAACAAGCCCUUA   200 Target Full Sequence	1.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   |||||||||||||||||||*| targets:727   AAAUAACCGAACAAACCCUCA   747 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
EZ113075.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||=||||||=|||||| targets:14   GAAUAACUGAACAAGCCCUUA   34 Target Full Sequence	2.5	TSA: Zea mays contig48736, mRNA sequence	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||||||||||*||||| targets:1347   GAAUAACCGAACAAAACCUUA   1367 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||||||||||*||||| targets:1491   GAAUAACCGAACAAAACCUUA   1511 Target Full Sequence	1.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||||||||||*||||| targets:1491   GAAUAACCGAACAAAACCUUA   1511 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   |*||||||||||||=|||||| targets:1998   AUAUAACCGAACAAGCCCUUA   2018 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018592.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =||||||*||||||=|||||| targets:1126   GAAUAACGGAACAAGCCCUUA   1146 Target Full Sequence	2.5	Zea mays clone EL01N0447E06.d mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   *|*|||||||||||=|||||| targets:1048   UACUAACCGAACAAGCCCUUA   1068 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ***|||||||||||=|||||| targets:3611   CCCUAACCGAACAAGCCCUUA   3631 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ***|||||||||||=|||||| targets:3611   CCCUAACCGAACAAGCCCUUA   3631 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085393.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ***|||=|||||||||||||| targets:1693   CCUUAAUCGAACAAACCCUUA   1713 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054119.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   ***|||||||||||=|||||| targets:468   UUCUAACCGAACAAGCCCUUA   488 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =**|||||||||||=|||||| targets:793   GCCUAACCGAACAAGCCCUUA   813 Target Full Sequence	2.5	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   =**|||||||||||=|||||| targets:433   GCCUAACCGAACAAGCCCUUA   453 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
EU941788.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   |**|||||||||||=|||||| targets:208   ACCUAACCGAACAAGCCCUUA   228 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   |**|||||||||||=|||||| targets:218   ACCUAACCGAACAAGCCCUUA   238 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:21   UUUAUUGGCUUGUUUGGGAAU   1   |**|||||||||||=|||||| targets:148   ACCUAACCGAACAAGCCCUUA   168 Target Full Sequence	2.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget