Search result

BaseInfo

ncRNA ID novel_zma_miR2351
Species Zea mays
Class miRNA
Genome position Chr4:131027653-131027775 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 100 - AGGAUCGUUGUCACCAUAUGGUGU - 123
Stem-loop(if miRNA) --       -U G    -         UAAUUUAUUU G    UUUA       C  ----C       A
  AGGAUCG  U UCAC CAUAUGGUG          A UCAU    UACAGAA UC     UAUAUAU A
  |||||||  | |||| |||||||||          | ||||    ||||||| ||     ||||||| U
  UCCUAGU  A AGUG GUAUACUAC          U AGUA    AUGUUUU AG     GUGUAUA A
GU       UC G    U         ---------- G    --CC       U  UUACA       A
Stem-loop sequence AGGAUCGUUGUCACCAUAUGGUGUAAUUUAUUUAGUCAUUUUAUACAGAACUCCUAUAUAUAAUAAAUAUGUGACAUUGAUUUUUGUACCAUGAGUCAUCAUAUGUGUGAGACUUGAUCCUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680517.2
ncRNA:24   UGUG--GUAUACCACUGUUGCUAGGA   1
  |=||--||||||**||||||||||||
targets:8106   AUACUUCAUAUGACGACAACGAUCCU   8131

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA NA coding protein psRNATarget