| ncRNA ID | osa-miR5339 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr6:29362467-29362823 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 317 - CAGAUAGAGAAUCUUCUCAGA - 337 |
| Stem-loop(if miRNA) |
----------------- GUAAGGCAUCGUUAACAGAUAGAGAAUCUUCUCAGAAAAUUCUCCAAAUUUGAUGUUUGAAAUCUGACUGAUUCUUUGAGAACUGUGAGCCUGUAGUUAAGCUAUCAGCUUGAAAUCCUUUACUGCAGCACUACAUACUCCGGAACCUUGUUACUGUUAUUAGC AUGCU C ||||| CAAUU A GACUCGGAAACAAACAA GUCUAUUUCUUAUAAGGGUAGUCUAAGAGGUAAACUAACAUAGGUUUUCGUAUACGAAGAAUACGGAAGUUCCACAUCGACUUAUAGACCCACCAUAUCGAAUGUAUAUUGACCCUUCUCAGGAAAACACCACCGUGAUUGACAUUUAACUCGACCGAACGACC |
| Stem-loop sequence | AUGCUGUAAGGCAUCGUUAACAGAUAGAGAAUCUUCUCAGAAAAUUCUCCAAAUUUGAUGUUUGAAAUCUGACUGAUUCUUUGAGAACUGUGAGCCUGUAGUUAAGCUAUCAGCUUGAAAUCCUUUACUGCAGCACUACAUACUCCGGAACCUUGUUACUGUUAUUAGCCACCAGCAAGCCAGCUCAAUUUACAGUUAGUGCCACCACAAAAGGACUCUUCCCAGUUAUAUGUAAGCUAUACCACCCAGAUAUUCAGCUACACCUUGAAGGCAUAAGAAGCAUAUGCUUUUGGAUACAAUCAAAUGGAGAAUCUGAUGGGAAUAUUCUUUAUCUGUUAACAACAAACAAAGGCUCAG |
| 1 | PMID:21791435
"Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)"; Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q; J Exp Bot. 62:4943-4954(2011). |
| 2 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |