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BaseInfo

ncRNA ID	novel_zma_miR2348
Species	Zea mays
Class	miRNA
Genome position	Chr6:34424731-34424798 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	45 - GGGUGACAAAUAUUCGAGAACGGA - 68
Stem-loop(if miRNA)	--       UUU          G U        A   CGUUCUU   UAUUUGUCGC U UUAGUUCA A   |||||||   |||||||||| | ||||||||   GCAAGAG   AUAAACAGUG G AAUCAAGU A AG       CUU          G C        A
Stem-loop sequence	CGUUCUUUUUUAUUUGUCGCGUUUUAGUUCAAAAAUGAACUAACGGGUGACAAAUAUUCGAGAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT042256.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||||||||||||||||||||=||| targets:852   UCCGUUCUCGAAUAUUUGUCGCCC   875 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049723.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |=||||||||||||||||||=||| targets:54   UUCGUUCUCGAAUAUUUGUCGCCC   77 Target Full Sequence	1.5	TSA: Zea mays contig50841, mRNA sequence	NA	coding protein	psRNATarget
EZ071175.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||||||||=|||||||||||=||| targets:100   UCCGUUCUUGAAUAUUUGUCGCCC   123 Target Full Sequence	2.5	TSA: Zea mays contig06812, mRNA sequence	NA	coding protein	psRNATarget
BT061281.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||||||||||||||||||||=||= targets:1378   UCCGUUCUCGAAUAUUUGUCGCCU   1401 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds	NA	coding protein	psRNATarget
EU970775.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|||||||||||||||||||=||| targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	1.5	Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157971.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|||||||||||||||||||=||| targets:2256   CCCGUUCUCGAAUAUUUGUCGCCC   2279 Target Full Sequence	1.5	Zea mays zeaxanthin epoxidase (LOC100285076), mRNA	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|||||||||||||||||||=||| targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|||||||||||||||||||=||| targets:2925   CCCGUUCUCGAAUAUUUGUCGCCC   2948 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647986.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||||||||||||||=||* targets:1420   UCUGUUCUCGAAUAUUUGUCGCCG   1443 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 3 (LOC103627692), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ084539.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |||||||||*||||||||||=||| targets:24   UCCGUUCUCAAAUAUUUGUCGCCC   47 Target Full Sequence	2.5	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
EZ113291.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |||*||||||||||||||||=||| targets:89   UCCCUUCUCGAAUAUUUGUCGCCC   112 Target Full Sequence	1.5	TSA: Zea mays contig48952, mRNA sequence	NA	coding protein	psRNATarget
AY110930.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||||||*|||||||||||||=||| targets:201   UCCGUUAUCGAAUAUUUGUCGCCC   224 Target Full Sequence	2.5	Zea mays CL27955_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008675718.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||||||*||||||||||||||=|| targets:1133   UCCGUUAUCGAAUAUUUGUCAUCC   1156 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA	NA	coding protein	psRNATarget
EU950009.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:771   CCUGUUCUUGAAUAUUUGUCAUCC   794 Target Full Sequence	2.5	Zea mays clone 457222 mRNA sequence	NA	coding protein	psRNATarget
NM_001138169.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1752   CCUGUUCUUGAAUAUUUGUCAUCC   1775 Target Full Sequence	2.5	Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), mRNA	NA	coding protein	psRNATarget
BT035140.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1752   CCUGUUCUUGAAUAUUUGUCAUCC   1775 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0042B01 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647454.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1767   CCUGUUCUUGAAUAUUUGUCAUCC   1790 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539257.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1833   CCUGUUCUUGAAUAUUUGUCAUCC   1856 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647374.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1857   CCUGUUCUUGAAUAUUUGUCAUCC   1880 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647327.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *|=|||||=||||||||||||=|| targets:1869   CCUGUUCUUGAAUAUUUGUCAUCC   1892 Target Full Sequence	2.5	PREDICTED: Zea mays Mitochondrial ATP synthase D chain-related protein (LOC100192998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152354.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:1907   UCUGUUCUUAAAUAUUUGUCACCC   1930 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100279333), mRNA	NA	coding protein	psRNATarget
BT054055.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:1907   UCUGUUCUUAAAUAUUUGUCACCC   1930 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0156F17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674470.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:1980   UCUGUUCUUAAAUAUUUGUCACCC   2003 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674472.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:2040   UCUGUUCUUAAAUAUUUGUCACCC   2063 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008674471.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:2053   UCUGUUCUUAAAUAUUUGUCACCC   2076 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674469.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:2063   UCUGUUCUUAAAUAUUUGUCACCC   2086 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674473.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:2077   UCUGUUCUUAAAUAUUUGUCACCC   2100 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279333), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU956664.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   ||=|||||=*|||||||||||||| targets:2067   UCUGUUCUUAAAUAUUUGUCACCC   2090 Target Full Sequence	2.0	Zea mays clone 1570160 mRNA sequence	NA	coding protein	psRNATarget
EZ059364.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |||*|||||||||||||*|||||| targets:142   UCCAUUCUCGAAUAUUUAUCACCC   165 Target Full Sequence	1.5	TSA: Zea mays contig60486, mRNA sequence	NA	coding protein	psRNATarget
BT017839.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |==||||||*||||||||||=||| targets:1075   UUUGUUCUCAAAUAUUUGUCGCCC   1098 Target Full Sequence	2.5	Zea mays clone EL01N0509G09.c mRNA sequence	NA	coding protein	psRNATarget
EU974460.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |==||||||*||||||||||=||| targets:1077   UUUGUUCUCAAAUAUUUGUCGCCC   1100 Target Full Sequence	2.5	Zea mays clone 449839 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547048.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *||**||||||||||||||||||| targets:674   ACCUCUCUCGAAUAUUUGUCACCC   697 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109939209 (LOC109939209), mRNA	NA	coding protein	psRNATarget
AY105827.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |=**|||||||||||||||||||* targets:860   UUAAUUCUCGAAUAUUUGUCACCA   883 Target Full Sequence	1.0	Zea mays PCO152724 mRNA sequence	NA	coding protein	psRNATarget
EU974031.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |=**|||||||||||||||||||* targets:1417   UUAAUUCUCGAAUAUUUGUCACCA   1440 Target Full Sequence	1.0	Zea mays clone 438033 sel1-like repeat mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545189.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |=**|||||||||||||||||||* targets:2025   UUAAUUCUCGAAUAUUUGUCACCA   2048 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100383612 (pco152724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
AY106613.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *||*||||=*|||||||||||||| targets:126   GCCAUUCUUAAAUAUUUGUCACCC   149 Target Full Sequence	2.0	Zea mays PCO094715 mRNA sequence	NA	coding protein	psRNATarget
XM_008681686.2	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   *||*|||||||||||||*|||||= targets:1808   ACCAUUCUCGAAUAUUUAUCACCU   1831 Target Full Sequence	2.5	PREDICTED: Zea mays glucan endo-1,3-beta-glucosidase, acidic isoform-like (LOC103654866), mRNA	NA	coding protein	psRNATarget
AY111871.1	ncRNA:24   AGGCAAGAGCUUAUAAACAGUGGG   1   |**||||||||||||||||||*|= targets:172   UAGGUUCUCGAAUAUUUGUCAACU   195 Target Full Sequence	2.5	Zea mays CL48989_1 mRNA sequence	NA	coding protein	psRNATarget