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BaseInfo

ncRNA ID novel_zma_miR2344
Species Zea mays
Class miRNA
Genome position Chr6:32341650-32341711 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 39 - GUGAGUUCUGAUCCUGGCACGCAC - 62
Stem-loop(if miRNA) --UU      U   G  UC         AUC
    GUGCUA GAU AG  AUUUAUGUA   G
    |||||| ||| ||  |||||||||   U
    CACGGU CUA UC  UGAGUGCAU   U
CACG      C   G  -U         GUG
Stem-loop sequence UUGUGCUAUGAUGAGUCAUUUAUGUAAUCGUUGUGUACGUGAGUUCUGAUCCUGGCACGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552874.1
ncRNA:24   CACGCACGGUCCUAGUCUUGAGUG   1
  |||=||||==||||||||||||||
targets:822   GUGUGUGCUGGGAUCAGAACUCAC   845

2.0 PREDICTED: Zea mays uncharacterized LOC100279003 (LOC100279003), transcript variant X2, mRNA NA coding protein psRNATarget
EU950542.1
ncRNA:24   CACGCACGGUCCUAGUCUUGAGUG   1
  *|*|*||||||||||||||||||=
targets:140   AUACCUGCCAGGAUCAGAACUCAU   163

1.0 Zea mays clone 497975 mRNA sequence NA coding protein psRNATarget