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BaseInfo

ncRNA ID	osa-miR397a
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:28489785-28489898 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UCAUUGAGUGCAGCGUUGAUG - 31
Stem-loop(if miRNA)	A          C        C           ACAA   -UA       -C    UG  UCAAAUGCAU AUUGAGUG AGCGUUGAUGA    CGG   ACCGGUC  AUGU  A  |||||||||| |||||||| |||||||||||    |||   |||||||  ||||  GGUUUGCGUA UAACUCAC UCGCGACUACU    GUC   UGGCCGG  UACG  U C          C        U           ACUA   UAG       UU    CG
Stem-loop sequence	AUCAAAUGCAUCAUUGAGUGCAGCGUUGAUGAACAACGGUAACCGGUCCAUGUUGAUGCGCAUUUGGCCGGUGAUCUGAUCAUCAUCAGCGCUUCACUCAAUCAUGCGUUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT829762.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||=|||||||| targets:759   CAUCAACGCUGCGCUCAAUGA   779 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA225G10, full insert sequence	NA	coding protein	psRNATarget
AK066513.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||=|||||||| targets:762   CAUCAACGCUGCGCUCAAUGA   782 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013068J22, full insert sequence	NA	coding protein	psRNATarget
XM_015769250.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||=|||||||| targets:761   CAUCAACGCUGCGCUCAAUGA   781 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group laccase-12/13-like (LOC4327501), mRNA	laccase-12/13-like(LOC4327501)	coding protein	psRNATarget
XM_015769221.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   |||||||||||||||||||*| targets:1489   CAUCAACGCUGCACUCAAUAA   1509 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267626 (LOC9267626), mRNA	uncharacterized LOC9267626(LOC9267626)	coding protein	psRNATarget
XM_015761310.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   |||||||||||||||*||||| targets:579   CAUCAACGCUGCACUGAAUGA   599 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group laccase-22 (LOC9269875), mRNA	laccase-22(LOC9269875)	coding protein	psRNATarget
XM_015782683.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||||||||*|| targets:747   CAUCAACGCUGCACUCAACGA   767 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group laccase-12/13 (LOC4339003), mRNA	laccase-12/13(LOC4339003)	coding protein	psRNATarget
AK068047.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||||||||*|| targets:747   CAUCAACGCUGCACUCAACGA   767 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013135B16, full insert sequence	NA	coding protein	psRNATarget
XM_015782682.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||||||||||||||*|| targets:747   CAUCAACGCUGCACUCAACGA   767 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group laccase-12/13 (LOC4339004), mRNA	laccase-12/13(LOC4339004)	coding protein	psRNATarget
XM_015776768.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   |||||||||||||*||||||* targets:729   CAUCAACGCUGCAGUCAAUGU   749 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group laccase-8 (LOC4324803), mRNA	laccase-8(LOC4324803)	coding protein	psRNATarget
AK242866.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||=*||||||||||||||* targets:536   GAUCGUCGCUGCACUCAAUGC   556 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090075I22, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:19903869 "Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009).