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BaseInfo

ncRNA ID novel_zma_miR2339
Species Zea mays
Class miRNA
Genome position Chr6:93093517-93093646 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089713;SRR2089715;SRR5451005;SRR2089699;SRR2089703;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 107 - AGACCUUGUUCGUUUACGUCGGAU - 130
Stem-loop(if miRNA) --  A            ACG        --CACC      C     -    AAUCAAA    --A  U
  AG CCUUGUUCGUUU   UCGGAUUG      CGGAAU GUUCC AGCU       GUUU   UA A
  || ||||||||||||   ||||||||      |||||| ||||| ||||       ||||   || A
  UC GGAACAAGCAAA   GGCCUAAC      GCCUUG UAAGG UCGG       CGAA   AU A
AU  C            GAU        CACCCA      C     A    --CCUAA    GAG  U
Stem-loop sequence AGACCUUGUUCGUUUACGUCGGAUUGCACCCGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCGGCUAGGAAUCGUUCCGACCCACCAAUCCGGUAGAAACGAACAAGGCCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405914.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=|||||||||||||||||
targets:115   AUCCGAUGUAAACGAACAAGGUCU   138

1.0 Sequence 4039 from Patent EP2074227 NA coding protein psRNATarget
JB166375.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=|||||||||||||||||
targets:115   AUCCGAUGUAAACGAACAAGGUCU   138

1.0 Sequence 4039 from Patent EP2559767 NA coding protein psRNATarget
LQ238044.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=|||||||||||||||||
targets:115   AUCCGAUGUAAACGAACAAGGUCU   138

1.0 Sequence 4039 from Patent EP2985353 NA coding protein psRNATarget
XM_020538731.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=|||||||||||||||||
targets:5342   AUCCGAUGUAAACGAACAAGGUCU   5365

1.0 PREDICTED: Zea mays UDP-glucose:glycoprotein glucosyltransferase (LOC103627875), mRNA NA coding protein psRNATarget
LQ238081.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:111   AUCCGACGUAAACGAACAAGGCCU   134

1.5 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
HI405951.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:111   AUCCGACGUAAACGAACAAGGCCU   134

1.5 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
JB166412.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:111   AUCCGACGUAAACGAACAAGGCCU   134

1.5 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
HI405897.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:116   AUCCGACGUAAACGAACAAGGCCU   139

1.5 Sequence 4022 from Patent EP2074227 NA coding protein psRNATarget
LQ238027.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:116   AUCCGACGUAAACGAACAAGGCCU   139

1.5 Sequence 4022 from Patent EP2985353 NA coding protein psRNATarget
JB166358.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:116   AUCCGACGUAAACGAACAAGGCCU   139

1.5 Sequence 4022 from Patent EP2559767 NA coding protein psRNATarget
EU977040.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||=||=|||||||||||||||*|
targets:697   AUCUGAUGUAAACGAACAAGGUYU   720

2.5 Zea mays clone 997067 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008653755.2
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:433   AUCCGACGUAAACGAACAAGGCCU   456

1.5 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541330.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:515   AUCCGACGUAAACGAACAAGGCCU   538

1.5 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008653754.2
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:697   AUCCGACGUAAACGAACAAGGCCU   720

1.5 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008653753.2
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  |||||||||||||||||||||*||
targets:899   AUCCGACGUAAACGAACAAGGCCU   922

1.5 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X1, mRNA NA coding protein psRNATarget
JB166422.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:113   AUCCGAUGUAAACGAACAAGGCCU   136

2.5 Sequence 4086 from Patent EP2559767 NA coding protein psRNATarget
LQ238091.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:113   AUCCGAUGUAAACGAACAAGGCCU   136

2.5 Sequence 4086 from Patent EP2985353 NA coding protein psRNATarget
HI405961.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:113   AUCCGAUGUAAACGAACAAGGCCU   136

2.5 Sequence 4086 from Patent EP2074227 NA coding protein psRNATarget
LQ238061.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4056 from Patent EP2985353 NA coding protein psRNATarget
JB166392.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4056 from Patent EP2559767 NA coding protein psRNATarget
HI405931.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4056 from Patent EP2074227 NA coding protein psRNATarget
JB166389.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4053 from Patent EP2559767 NA coding protein psRNATarget
HI405928.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4053 from Patent EP2074227 NA coding protein psRNATarget
LQ238064.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4059 from Patent EP2985353 NA coding protein psRNATarget
HI405934.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4059 from Patent EP2074227 NA coding protein psRNATarget
LQ238058.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4053 from Patent EP2985353 NA coding protein psRNATarget
JB166395.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:114   AUCCGAUGUAAACGAACAAGGCCU   137

2.5 Sequence 4059 from Patent EP2559767 NA coding protein psRNATarget
LQ238035.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4030 from Patent EP2985353 NA coding protein psRNATarget
JB166367.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4031 from Patent EP2559767 NA coding protein psRNATarget
HI405905.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4030 from Patent EP2074227 NA coding protein psRNATarget
HI405906.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4031 from Patent EP2074227 NA coding protein psRNATarget
LQ238036.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4031 from Patent EP2985353 NA coding protein psRNATarget
JB166366.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4030 from Patent EP2559767 NA coding protein psRNATarget
LQ238040.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4035 from Patent EP2985353 NA coding protein psRNATarget
JB166371.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4035 from Patent EP2559767 NA coding protein psRNATarget
HI405910.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:115   AUCCGAUGUAAACGAACAAGGCCU   138

2.5 Sequence 4035 from Patent EP2074227 NA coding protein psRNATarget
EU965933.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:6   AUCCGAUGUAAACGAACAAGGCCU   29

2.5 Zea mays clone 290117 NAD(P)H-dependent oxidoreductase mRNA, complete cds NA coding protein psRNATarget
XM_020549360.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:1161   AUCCGAUGUAAACGAACAAGGCCU   1184

2.5 PREDICTED: Zea mays WRKY transcription factor WRKY76 (LOC103647425), mRNA NA coding protein psRNATarget
BT088026.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:1291   AUCCGAUGUAAACGAACAAGGCCU   1314

2.5 Zea mays full-length cDNA clone ZM_BFb0366I22 mRNA, complete cds NA coding protein psRNATarget
NM_001196885.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:1291   AUCCGAUGUAAACGAACAAGGCCU   1314

2.5 Zea mays Protein kinase superfamily protein (LOC100502407), mRNA NA coding protein psRNATarget
XM_020539404.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:3529   AUCCGAUGUAAACGAACAAGGCCU   3552

2.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539406.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:3547   AUCCGAUGUAAACGAACAAGGCCU   3570

2.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020539386.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:3564   AUCCGAUGUAAACGAACAAGGCCU   3587

2.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539392.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:3582   AUCCGAUGUAAACGAACAAGGCCU   3605

2.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539417.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=||||||||||||||*||
targets:3832   AUCCGAUGUAAACGAACAAGGCCU   3855

2.5 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X9, mRNA NA coding protein psRNATarget
LQ240874.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:114   AUCCGACGGAAACGAACAAGGCCU   137

2.5 Sequence 6869 from Patent EP2985353 NA coding protein psRNATarget
HI408744.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:114   AUCCGACGGAAACGAACAAGGCCU   137

2.5 Sequence 6869 from Patent EP2074227 NA coding protein psRNATarget
JB169205.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:114   AUCCGACGGAAACGAACAAGGCCU   137

2.5 Sequence 6869 from Patent EP2559767 NA coding protein psRNATarget
JB166550.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:115   AUCCGACGGAAACGAACAAGGCCU   138

2.5 Sequence 4214 from Patent EP2559767 NA coding protein psRNATarget
HI406089.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:115   AUCCGACGGAAACGAACAAGGCCU   138

2.5 Sequence 4214 from Patent EP2074227 NA coding protein psRNATarget
LQ238219.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:115   AUCCGACGGAAACGAACAAGGCCU   138

2.5 Sequence 4214 from Patent EP2985353 NA coding protein psRNATarget
EU949492.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:349   AUCCGACGGAAACGAACAAGGCCU   372

2.5 Zea mays clone 420421 mRNA sequence NA coding protein psRNATarget
EU948349.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:587   AUCCGACGGAAACGAACAAGGCCU   610

2.5 Zea mays clone 373385 mRNA sequence NA coding protein psRNATarget
BT017859.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:1037   AUCCGACGGAAACGAACAAGGCCU   1060

2.5 Zea mays clone EL01N0511E01.c mRNA sequence NA coding protein psRNATarget
NM_001155337.2
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:1419   AUCCGACGGAAACGAACAAGGCCU   1442

2.5 Zea mays protein recA (LOC100282426), mRNA NA coding protein psRNATarget
EU960853.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:1420   AUCCGACGGAAACGAACAAGGCCU   1443

2.5 Zea mays clone 229066 protein recA mRNA, complete cds NA coding protein psRNATarget
XM_020538339.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:470   AUCCGACGGAAACGAACAAGGCCU   493

2.5 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939916), transcript variant X1, mRNA NA coding protein psRNATarget
BT066418.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:1697   AUCCGACGGAAACGAACAAGGCCU   1720

2.5 Zea mays full-length cDNA clone ZM_BFc0124A04 mRNA, complete cds NA coding protein psRNATarget
NM_001175825.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:1697   AUCCGACGGAAACGAACAAGGCCU   1720

2.5 Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100383160), mRNA NA coding protein psRNATarget
NM_001153653.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:2614   AUCCGACGGAAACGAACAAGGCCU   2637

2.5 Zea mays ATP-binding cassette sub-family G member 2 (LOC100280733), mRNA NA coding protein psRNATarget
EU953449.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||||*||||||||||||*||
targets:2614   AUCCGACGGAAACGAACAAGGCCU   2637

2.5 Zea mays clone 1412735 ATP-binding cassette sub-family G member 2 mRNA, complete cds NA coding protein psRNATarget
EZ107386.1
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||||||=**|||||||||||||||
targets:73   AUCCGAUAGAAACGAACAAGGUCU   96

3.0 TSA: Zea mays contig43044, mRNA sequence NA coding protein psRNATarget
XM_008650936.2
ncRNA:24   UAGGCUGCAUUUGCUUGUUCCAGA   1
  ||=||=|**|||||||||||||||
targets:1795   AUUCGGCACAAACGAACAAGGUCU   1818

3.0 PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA NA coding protein psRNATarget
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