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BaseInfo

ncRNA ID	novel_zma_miR2338
Species	Zea mays
Class	miRNA
Genome position	Chr6:24903349-24903561 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	22
Mature sequence(if miRNA)	1 - AUGUCGUGAUAUCAUAUGUAGA - 22
Stem-loop(if miRNA)	--                                           A                                             C  C    -  -CG U   AUGUCGUGAUAUCAUAUGUAGAGACUCUGAUAAAAAUUUAAAA UGUUUUGUGAAAGUUGUCACGCACUAUGUGUAGAAACCUAGCCGG CU CACA GA   C U   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||   | U   UACAGCACUAUAGUAUACAUCUCUGAGACUAUUUUUAAAUUUU ACAAAGCACUUUCAACAGUGCGUGAUACACAUCUUUGGAUCGGUC GA GUGU CU   G A UC                                           C                                             A  A    A  UUA U
Stem-loop sequence	AUGUCGUGAUAUCAUAUGUAGAGACUCUGAUAAAAAUUUAAAAAUGUUUUGUGAAAGUUGUCACGCACUAUGUGUAGAAACCUAGCCGGCCUCCACAGACGCUUUAUGAUUUCAUGUGAAGACUGGCUAGGUUUCUACACAUAGUGCGUGACAACUUUCACGAAACACUUUUAAAUUUUUAUCAGAGUCUCUACAUAUGAUAUCACGACAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235352.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   ||||=|||||||||||=||||| targets:205   UCUAUAUAUGAUAUCAUGACAU   226 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   ||||=|||||||||||=||||| targets:205   UCUAUAUAUGAUAUCAUGACAU   226 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   ||||=|||||||||||=||||| targets:205   UCUAUAUAUGAUAUCAUGACAU   226 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   *|||||||||||||||=||||| targets:4030   GCUACAUAUGAUAUCAUGACAU   4051 Target Full Sequence	1.5	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   |*||||||||||||||=||||* targets:205   UGUACAUAUGAUAUCAUGACAC   226 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   |*||||||||||||||=||||* targets:205   UGUACAUAUGAUAUCAUGACAC   226 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   AGAUGUAUACUAUAGUGCUGUA   1   |*||||||||||||||=||||* targets:205   UGUACAUAUGAUAUCAUGACAC   226 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget