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BaseInfo

ncRNA ID novel_zma_miR2333
Species Zea mays
Class miRNA
Genome position Chr6:142991039-142991144 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2287161
Length 24
Mature sequence(if miRNA) 1 - GGCAAAGAAUAUAGCACUCGGCAA - 24
Stem-loop(if miRNA) --          ---      UA     G     -UUG  U              A
  GCCGAGUGUU   UUCUUU  CCGAG GUUUU    UG GGCACUCGGCAAAG G
  ||||||||||   ||||||  ||||| |||||    || ||||||||||||||
  CGGCUCACGA   AAGAAA  GGCUC CAAAA    GC CCGUGAGCCGUUUC C
AA          UAU      -C     A     UAAA  -              U
Stem-loop sequence GCCGAGUGUUUUCUUUUACCGAGGGUUUUUUGUGUGGCACUCGGCAAAGAGCUCUUUGCCGAGUGCCCGAAAUAAAACACUCGGCAAAGAAUAUAGCACUCGGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042352.1
ncRNA:24   AACGGCUCACGAUAUAAGAAACGG   1
  ||||||||||=*||||||||||||
targets:1209   UUGCCGAGUGUCAUAUUCUUUGCC   1232

2.5 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   AACGGCUCACGAUAUAAGAAACGG   1
  ||||||||||=*||||||||||||
targets:1259   UUGCCGAGUGUCAUAUUCUUUGCC   1282

2.5 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget