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BaseInfo

ncRNA ID	novel_zma_miR2331
Species	Zea mays
Class	miRNA
Genome position	Chr6:151437590-151437716 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	104 - UACUCCAAAACUCUGGGUAGAGCA - 127
Stem-loop(if miRNA)	--UA    -         ---------------   A    -- GCUAUGCUCCAGAGUUUAGAUUCCUUCUC     CUCC AAAACUCUG               GGU GAGC  A                             A     |||| |||||||||               ||| ||||  |     GAGG UUUUGAGAU               UAC CUCA  C                             U CGAC    C         UUUUUGUUCGACCUG   -    AA CUAAAUAAAUGGGCAGUGACGGUGGCCAA
Stem-loop sequence	UACUCCAAAACUCUGGGUAGAGCAGCUAUGCUCCAGAGUUUAGAUUCCUUCUCAUAACCGGUGGCAGUGACGGGUAAAUAAAUCCAAACUCCAUGUCCAGCUUGUUUUUUAGAGUUUUCGGAGCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067136.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |||||*|||=|||||||||||||| targets:873   UGCUCCACCUAGAGUUUUGGAGUA   896 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206F19 mRNA, complete cds	NA	coding protein	psRNATarget
BT084823.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |||||*||||||||||||*||||| targets:537   UGCUCCACCCAGAGUUUUAGAGUA   560 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0187L14 mRNA, complete cds	NA	coding protein	psRNATarget
BT088407.1	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   ||=||*||==|||||||||||||| targets:1624   UGUUCCACUUAGAGUUUUGGAGUA   1647 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0179M16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679385.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:60   UACUCUACACAGAGUUUUGGAAUA   83 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679388.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020551683.1	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008679392.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008679387.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008679389.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008679391.2	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020551681.1	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551682.1	ncRNA:24   ACGAGAUGGGUCUCAAAACCUCAU   1   |*||||||*||||||||||||*|| targets:61   UACUCUACACAGAGUUUUGGAAUA   84 Target Full Sequence	2.5	PREDICTED: Zea mays Tetraspanin-2 (LOC100383407), transcript variant X2, mRNA	NA	coding protein	psRNATarget