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BaseInfo

ncRNA ID	novel_zma_miR2329
Species	Zea mays
Class	miRNA
Genome position	Chr4:139661023-139661074 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	23
Mature sequence(if miRNA)	30 - UUUCUAUUUUUCUAAGGGAAAAU - 52
Stem-loop(if miRNA)	--           CU        AUG   UUUCUAUUUUU  AAGGGAAA   A   |||||||||||  ||||||||   A   AAAGGUAAAAA  UUCCCUUU   C CA           -U        AAU
Stem-loop sequence	UUUCUAUUUUUCUAAGGGAAAAUGAACUAAUUUCCCUUUAAAAAUGGAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550095.1	ncRNA:23   UAAAAGGGAAUCUUUUUAUCUUU   1   |||||||||||||||||||*||| targets:177   AUUUUCCCUUAGAAAAAUAAAAA   199 Target Full Sequence	1.5	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067220.1	ncRNA:23   UAAAAGGGAAUCUUUUUAUCUUU   1   |||||==||*||||||||||||| targets:648   AUUUUUUCUCAGAAAAAUAGAAA   670 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0325M14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176085.1	ncRNA:23   UAAAAGGGAAUCUUUUUAUCUUU   1   |||||==||*||||||||||||| targets:648   AUUUUUUCUCAGAAAAAUAGAAA   670 Target Full Sequence	3.0	Zea mays Protein NRT1/ PTR FAMILY 5.8 (LOC100383435), mRNA	NA	coding protein	psRNATarget
BT069650.1	ncRNA:23   UAA--AAGGGAAUCUUUUUAUCUUU   1   |||--||===||||||||||||||| targets:84   AUUAGUUUUUUUAGAAAAAUAGAAA   108 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0194N18 mRNA, complete cds	NA	coding protein	psRNATarget
EU964244.1	ncRNA:23   UAA--AAGGGAAUCUUUUUAUCUUU   1   |||--||===||||||||||||||| targets:46   AUUAGUUUUUUUAGAAAAAUAGAAA   70 Target Full Sequence	3.0	Zea mays clone 277280 glutathione S-transferase GSTF2 mRNA, complete cds	NA	coding protein	psRNATarget
EZ102704.1	ncRNA:23   UAAAAGGGAAUCUUUUUAUCUUU   1   |||||=**||||||||||||||| targets:15   AUUUUUAAUUAGAAAAAUAGAAA   37 Target Full Sequence	3.0	TSA: Zea mays contig38360, mRNA sequence	NA	coding protein	psRNATarget
XM_008661324.2	ncRNA:23   UAAAAGGGAAUCUUUUUAUCUUU   1   =*|||||=|||*||||||||||| targets:164   GAUUUCCUUUAAAAAAAUAGAAA   186 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638394 (LOC103638394), mRNA	NA	coding protein	psRNATarget