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BaseInfo

ncRNA ID novel_zma_miR2326
Species Zea mays
Class miRNA
Genome position Chr6:166177969-166178131 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - AAGCAUCUCAAGUUGGACCAAAAU - 24
Stem-loop(if miRNA) --              G             -UAAUAAA    UAAC          A  ----------         UAU   AUUUU
  AAGCAUCUCAAGUU GACCAAAAUUAUA        ACAA    AUUUAUGAUA CA          UAUAAAUAU   UAG     U
  |||||||||||||| |||||||||||||        ||||    |||||||||| ||          |||||||||   |||
  UUCGUAGAGUUCAA CUGGUUUUAAUAU        UGUU    UAAAUACUGU GU          AUAUUUAUA   AUC     C
GU              A             CUCUCUUA    --UC          A  UUAUCCGUAU         --U   AAUUA
Stem-loop sequence AAGCAUCUCAAGUUGGACCAAAAUUAUAUAAUAAAACAAUAACAUUUAUGAUAACAUAUAAAUAUUAUUAGAUUUUUCAUUAACUAUAUAUUUAUAUAUGCCUAUUUGAUGUCAUAAAUCUUUGUAUUCUCUCUAUAAUUUUGGUCAAACUUGAGAUGCUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020540356.1
ncRNA:24   UAAAACCAGGUUGAACUCUACGAA   1
  |*||||*||*||||||||||||||
targets:1382   AAUUUGAUCAAACUUGAGAUGCUU   1405

2.0 PREDICTED: Zea mays Salt tolerance-like protein (Orphan191), transcript variant X1, mRNA NA coding protein psRNATarget
EU941794.1
ncRNA:21   AACCAGGUUGAACUCUACGAA   1
  |||*||*||||||||||||||
targets:1   UUGAUCAAACUUGAGAUGCUU   21

2.0 Zea mays clone 1470136 mRNA sequence NA coding protein psRNATarget