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BaseInfo

ncRNA ID novel_zma_miR2324
Species Zea mays
Class miRNA
Genome position Chr6:164963820-164963994 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2089715
Length 24
Mature sequence(if miRNA) 152 - AACUGUUAGCUCUAGUGCAUUCAA - 175
Stem-loop(if miRNA) --                           G      -----------AAUU      GAAAUUAGCUAGCUAACAAAUAACUAAGUAAACUAU
  GAAUGCACUAGAGCUAAUAGUUAGUUG CUAAAA               GCUAGU                                    U
  ||||||||||||||||||||||||||| ||||||               ||||||                                    A
  CUUACGUGAUCUCGAUUGUCAAUCGAU GAUUUU               GUUUAU                                    G
AA                           -      AAUCGACUUCUGUAG      CAAUUCGAUUAUCAAGUCGAUGAAACUCAUUUAAUC
Stem-loop sequence GAAUGCACUAGAGCUAAUAGUUAGUUGGCUAAAAAAUUGCUAGUGAAAUUAGCUAGCUAACAAAUAACUAAGUAAACUAUUAGCUAAUUUACUCAAAGUAGCUGAACUAUUAGCUUAACUAUUUGGAUGUCUUCAGCUAAUUUUAGUAGCUAACUGUUAGCUCUAGUGCAUUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409979.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:77   UUGAAUGCACUAGAGCUAAUAGUU   100

1.5 Sequence 8104 from Patent EP2074227 NA coding protein psRNATarget
LQ242109.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:77   UUGAAUGCACUAGAGCUAAUAGUU   100

1.5 Sequence 8104 from Patent EP2985353 NA coding protein psRNATarget
JB170440.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:77   UUGAAUGCACUAGAGCUAAUAGUU   100

1.5 Sequence 8104 from Patent EP2559767 NA coding protein psRNATarget
LQ238928.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:11   UUGAAUGCACUAGAGCUAAUAGUU   34

1.5 Sequence 4923 from Patent EP2985353 NA coding protein psRNATarget
JB167259.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:11   UUGAAUGCACUAGAGCUAAUAGUU   34

1.5 Sequence 4923 from Patent EP2559767 NA coding protein psRNATarget
HI406798.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:11   UUGAAUGCACUAGAGCUAAUAGUU   34

1.5 Sequence 4923 from Patent EP2074227 NA coding protein psRNATarget
JB169148.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:12   UUGAAUGCACUAGAGCUAAUAGUU   35

1.5 Sequence 6812 from Patent EP2559767 NA coding protein psRNATarget
LQ240817.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:12   UUGAAUGCACUAGAGCUAAUAGUU   35

1.5 Sequence 6812 from Patent EP2985353 NA coding protein psRNATarget
HI408687.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:12   UUGAAUGCACUAGAGCUAAUAGUU   35

1.5 Sequence 6812 from Patent EP2074227 NA coding protein psRNATarget
LQ235100.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:15   UUGAAUGCACUAGAGCUAAUAGUU   38

1.5 Sequence 1095 from Patent EP2985353 NA coding protein psRNATarget
JB163431.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:15   UUGAAUGCACUAGAGCUAAUAGUU   38

1.5 Sequence 1095 from Patent EP2559767 NA coding protein psRNATarget
HI402970.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:15   UUGAAUGCACUAGAGCUAAUAGUU   38

1.5 Sequence 1095 from Patent EP2074227 NA coding protein psRNATarget
DQ244933.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:650   UUGAAUGCACUAGAGCUAAUAGUU   673

1.5 Zea mays clone 11846 mRNA sequence NA coding protein psRNATarget
BT063644.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:855   UUGAAUGCACUAGAGCUAAUAGUU   878

1.5 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
NM_001175005.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:855   UUGAAUGCACUAGAGCUAAUAGUU   878

1.5 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:3616   UUGAAUGCACUAGAGCUAAUAGUU   3639

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:3616   UUGAAUGCACUAGAGCUAAUAGUU   3639

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||||||||||||=||||
targets:1958   UUGAAUGCACUAGAGCUAAUAGUU   1981

1.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547730.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||||=|||||||||=||||
targets:2021   UUGAAUGCAUUAGAGCUAAUAGUU   2044

2.5 PREDICTED: Zea mays uncharacterized LOC100282506 (pco067337), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646094.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||=|||||||||||=||||
targets:614   UUGAAUGUACUAGAGCUAAUAGUU   637

2.5 PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020549505.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:270   UUAAAUGCACUAGAGCUAAUAGUU   293

1.5 PREDICTED: Zea mays Protein LSD1 (cl889_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538570.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:2327   UUUAAUGCACUAGAGCUAAUAGUU   2350

1.5 PREDICTED: Zea mays mucin-1-like (LOC109939971), mRNA NA coding protein psRNATarget
XM_020550364.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020548417.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:1762   UUAAAUGCACUAGAGCUAAUAGUU   1785

1.5 PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020548416.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:1762   UUAAAUGCACUAGAGCUAAUAGUU   1785

1.5 PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020548414.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:1762   UUAAAUGCACUAGAGCUAAUAGUU   1785

1.5 PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548415.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*||||||||||||||||=||||
targets:1847   UUAAAUGCACUAGAGCUAAUAGUU   1870

1.5 PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550369.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008676312.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550368.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X12, mRNA NA coding protein psRNATarget
XM_008674165.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:332   UUGAAUGAACUAGAGCUAAUAGUU   355

2.5 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676315.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008676313.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008676314.2
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550366.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  |||||||*|||||||||||=||||
targets:362   UUGAAUGAACUAGAGCUAAUAGUU   385

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X9, mRNA NA coding protein psRNATarget
BT066299.1
ncRNA:24   AACUUACGUGAUCUCGAUUGUCAA   1
  ||*|||*||||||||||||=||||
targets:1203   UUAAAUACACUAGAGCUAAUAGUU   1226

2.5 Zea mays full-length cDNA clone ZM_BFc0189M13 mRNA, complete cds NA coding protein psRNATarget
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